Bug #2881
R perspective, R package installation broken
Status: | New | Start date: | 07/24/2020 | |
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Priority: | High | Due date: | ||
Assignee: | - | % Done: | 0% |
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Category: | Stats / R | Spent time: | - | |
Target version: | TXM 0.8.2 |
Description
It is no more possible to run the basic "Tutorial to use the stylometric tools of the Stylo R package into TXM":
https://groupes.renater.fr/wiki/txm-users/public/tutorial_to_use_stylo_into_txm
When installing the stylo package, we get the following stacktrace:
Exécution de session1.R… R-err>Installing package into ‘/home/sheiden/TXM-0.8.1/R/libraries’ ** Erreur lors de l'exécution du script R /home/sheiden/TXM-0.8.1/scripts/R/session1.R : org.txm.statsengine.r.core.exceptions.RException: install.packages("stylo") ; ** Erreur R : "Error in contrib.url(repos, type) : trying to use CRAN without setting a mirror " lors de l'évaluation de : try({install.packages("stylo") }, silent=FALSE) . org.txm.statsengine.r.core.exceptions.RException: install.packages("stylo") ; ** Erreur R : "Error in contrib.url(repos, type) : trying to use CRAN without setting a mirror " lors de l'évaluation de : try({install.packages("stylo") }, silent=FALSE) at org.txm.statsengine.r.core.RWorkspace.eval(RWorkspace.java:1148) at org.txm.statsengine.r.core.RScriptEngine.executeScript(RScriptEngine.java:124) at org.txm.rcp.handlers.scripts.ExecuteScript.executeScript(ExecuteScript.java:206) at org.txm.rcp.handlers.scripts.ExecuteScript.execute(ExecuteScript.java:178) at org.eclipse.ui.internal.handlers.HandlerProxy.execute(HandlerProxy.java:291) at org.eclipse.ui.internal.handlers.E4HandlerProxy.execute(E4HandlerProxy.java:92) at sun.reflect.GeneratedMethodAccessor41.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:55) at org.eclipse.e4.core.internal.di.InjectorImpl.invokeUsingClass(InjectorImpl.java:305) at org.eclipse.e4.core.internal.di.InjectorImpl.invoke(InjectorImpl.java:239) at org.eclipse.e4.core.contexts.ContextInjectionFactory.invoke(ContextInjectionFactory.java:132) at org.eclipse.e4.core.commands.internal.HandlerServiceHandler.execute(HandlerServiceHandler.java:152) at org.eclipse.core.commands.Command.executeWithChecks(Command.java:494) at org.eclipse.core.commands.ParameterizedCommand.executeWithChecks(ParameterizedCommand.java:487) at org.eclipse.e4.core.commands.internal.HandlerServiceImpl.executeHandler(HandlerServiceImpl.java:210) at org.eclipse.e4.ui.workbench.renderers.swt.HandledContributionItem.executeItem(HandledContributionItem.java:431) at org.eclipse.e4.ui.workbench.renderers.swt.AbstractContributionItem.handleWidgetSelection(AbstractContributionItem.java:446) at org.eclipse.e4.ui.workbench.renderers.swt.AbstractContributionItem.lambda$2(AbstractContributionItem.java:472) at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:86) at org.eclipse.swt.widgets.Display.sendEvent(Display.java:5348) at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1348) at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4602) at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4183) at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$5.run(PartRenderingEngine.java:1150) at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336) at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1039) at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:153) at org.eclipse.ui.internal.Workbench.lambda$3(Workbench.java:680) at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336) at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:594) at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148) at org.txm.rcp.Application.start(Application.java:260) at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:653) at org.eclipse.equinox.launcher.Main.basicRun(Main.java:590) at org.eclipse.equinox.launcher.Main.run(Main.java:1499) at org.eclipse.equinox.launcher.Main.main(Main.java:1472) Caused by: org.txm.statsengine.r.core.exceptions.RException: ** Erreur R : "Error in contrib.url(repos, type) : trying to use CRAN without setting a mirror " lors de l'évaluation de : try({install.packages("stylo") }, silent=FALSE) at org.txm.statsengine.r.core.RWorkspace.safeEval(RWorkspace.java:1559) at org.txm.statsengine.r.core.RWorkspace.eval(RWorkspace.java:1141) ... 46 more Exécution de session1.R…
Solution 1¶
- use "https://cloud.r-project.org" as default packages repository
- add the new R preference : "packages repository"
Solution 2¶
Open the R package repository dialog box or open a SWT dialog box (clone of the R dialog box)
History
#1 Updated by Matthieu Decorde 7 months ago
- Subject changed from R Perspective broken to R perspective, R package installation broken
- Description updated (diff)