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Natively compute dyad shift an common_wp_pvalue in align_inter_strain_nucs
Adding llr features
Adding min_unr_width check in get_unrs function
Some change for the visualization of chains
Bug fix of juxtaposed regions in union_regions
Fixing bug in flat_aggregated_intra_strain_nucs
declaring flat_aggregated_intra_strain_nucs
Fixing watch_samples bug with only one read on a cur.
Adding documentation