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# Date Auteur Commentaire
780f632a 21/01/2016 14:28 Florent Chuffart

Adding R_tuorial (reduce sampkle set, Sweave script) and adapting package in consequence
b26ac9e7 19/01/2016 18:45 Florent Chuffart

Adding top level functions build_maps and build_count_table
3961deb6 19/09/2015 12:02 Florent Chuffart

Updating documentation
cc54d805 17/07/2015 15:47 Florent Chuffart

Fixing "nb_track" bug in watch_sample function
c25275e2 16/07/2015 18:02 Florent Chuffart

Documenting c2c creation.
3bfae55d 12/06/2015 11:14 Florent Chuffart

Option defaut fix in watch_samples,
plot_fuzzy_nucs = FALSE
3761ede2 18/05/2015 10:09 Florent Chuffart

Removing (comments) buggy version that uses dplyr.
d973538c 05/03/2015 15:31 Florent Chuffart

Using dplyr to filter reads
Fixing bug concernong number of MNase replicate != 3
Adding NEUTRAL_TRANSLATE_CUR parameter in configuration file
5badc2fd 18/07/2014 17:34 Florent Chuffart

Publishing version for submission with documentation and tutorial
e5603c3f 18/07/2014 15:27 Florent Chuffart

Adding workdir deps
dadb6a4d 11/07/2014 16:43 Florent Chuffart

Natively compute dyad shift an common_wp_pvalue in align_inter_strain_nucs
67157457 08/07/2014 09:43 Florent Chuffart

Activate llr_thres filtering in align_inter_strain_nucs
ec2936ea 03/07/2014 11:22 Florent Chuffart

Keep rejected common nuc in align_inter_strain_nucs
7e2d37e1 27/05/2014 15:05 Florent Chuffart

Adding llr features
37b11e9b 30/04/2014 11:17 Florent Chuffart

Adding min_unr_width check in get_unrs function
6e0010bc 29/04/2014 10:09 Florent Chuffart

Some change for the visualization of chains
4016229d 21/03/2014 18:10 Florent Chuffart

Fixing bug in watch_samples
0d5fbf02 20/03/2014 09:31 Florent Chuffart

Fixing bug in filter_tf_outputs
b69443b5 18/03/2014 17:22 Florent Chuffart

Fixing bug in watch_samples function
d492bca4 18/03/2014 17:15 Florent Chuffart

Fixing bug in watch_samples function
f0703205 18/03/2014 14:27 Florent Chuffart

Emprooving get_unrs function
0a13b5e3 17/03/2014 16:59 Florent Chuffart

Fixing bug in get_intra_strain_fuzzy
9fdbfada 17/03/2014 16:52 Florent Chuffart

Define and emproove get_intra_strain_fuzzy and get_unrs functions
5bfac5a3 13/03/2014 16:56 Florent Chuffart

Refactoring compute_inter_all_strain_curs
0303dbe8 06/03/2014 10:24 Florent Chuffart

Remove get_fuzzy fucntion
55c1cdff 05/03/2014 16:02 Florent Chuffart

Bug fix of juxtaposed regions in union_regions
9011a383 05/03/2014 11:06 Florent Chuffart

Fixing bug in flat_aggregated_intra_strain_nucs
21b8928f 05/03/2014 10:17 Florent Chuffart

declaring flat_aggregated_intra_strain_nucs
7646593d 04/03/2014 14:43 Florent Chuffart

Emproving flat_aggregated_intra_strain_nucs function
dc58ee6c 28/02/2014 14:17 Florent Chuffart

Emproving plot_chain feature
20bcf264 27/02/2014 16:56 Florent Chuffart

Bug fix in watch_sample
729c934e 27/02/2014 16:51 Florent Chuffart

Adding chain visualiZation feature in watch_sample function
b8a95426 27/01/2014 17:17 Florent Chuffart

Fixing bug in build_replicates fucntion
1e310114 22/01/2014 14:01 Florent Chuffart

Fixing bug in watch_samples function
cc54c799 21/01/2014 19:17 Florent Chuffart

Fixing bug in get_all_reads function
0d1475ac 20/01/2014 20:45 Florent Chuffart

Fixing bug
b20637ed 20/01/2014 18:52 Florent Chuffart

Fixing bug in substract_region fucntion
59ad95ca 20/01/2014 17:06 Florent Chuffart

Fixing bug in get_fuzzy function
f56c14b2 19/01/2014 17:13 Florent Chuffart

Fixing translte_roi bug
5a26597a 19/01/2014 10:19 Florent Chuffart

Fixing bug in translate_roi function
a5836478 19/01/2014 09:31 Florent Chuffart

Fixing bug in translate_regions
a0b91fee 18/01/2014 18:35 Florent Chuffart

Fixing bug in align_inter_strain_nucs function
883439d6 18/01/2014 15:52 Florent Chuffart

Fixing bug in align_inter_strain_nucs function
9ed6ab9c 18/01/2014 11:45 Florent Chuffart

Fixing bug in align_inter_strain_nucs (translate big_roi)
1e34bb1f 18/01/2014 11:02 Florent Chuffart

Fixing "cross-translation" bug in align_inter_strain_nucs function
8c87ee64 18/01/2014 09:35 Florent Chuffart

Fixing bug in translate_roi function
ded736c8 17/01/2014 15:27 Florent Chuffart

Fixing bug in translate_roi function
54cc8283 17/01/2014 14:25 Florent Chuffart

Fixing bug for translate_roi function
62d69d53 17/01/2014 10:35 Florent Chuffart

Fixing bug on translate_roi fucntion
ac6bc625 16/01/2014 15:58 Florent Chuffart

Fixing bug translate_roi
e108a232 16/01/2014 14:26 Florent Chuffart

Fixing bug for translate_roi function
ddd6e221 16/01/2014 09:48 Florent Chuffart

Fixing bug on get_fuzzy fucntion
8e9facd8 15/01/2014 15:03 Florent Chuffart

Fixing watch_samples bug with only one read on a cur.
61914235 14/01/2014 17:28 Florent Chuffart

Integrating coverage display feature
1d833b97 14/01/2014 15:55 Florent Chuffart

Integrating yeast strain translation features in the package Debugging big_roi shift bug in translate_roi function.
a52f85d7 13/01/2014 16:43 Florent Chuffart

Debugging watch_sample function when there is no reads on a given region.
7164d3ac 10/01/2014 13:38 Florent Chuffart

Removing gplots dependency
935a568c 10/01/2014 11:20 Florent Chuffart

Adding documentation