Laboratoire RDP » Biophysics Team » FLORIVAR

#! /bin/bash

# Usage:

# ------

# ./orient_sepals.sh directory filetype

# filetype = '.tif' or '.inr.gz'

indir=$1

filetype=$2

imagetype=$3

outdir=$indir'_oriented-sepals'

mkdir $indir'/'$outdir

cd $indir

logfile='orient_sepals-'$indir'.log'

date > $logfile

echo '--------------------------' >> $logfile

for file in *$filetype

do

	echo '--------------------------' >> $logfile

	echo $file  >> $logfile

	echo $file $outdir

	echo '--------------------------' >> $logfile

	if test $imagetype=="grey"

	then

		echo 'orienting grey image '$file

		orient_sepal.py $file $outdir $imagetype

	else

		echo 'orienting segmented image '$file

		orient_sepal.py $file $outdir

	fi

	echo '--------------------------' >> $logfile

done

#scp */*_oriented.inr.gz $oriented

cd ..