root / bin / image2geometry / orient_sepals.sh @ 16
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| 1 | 1 | akiss | #! /bin/bash |
|---|---|---|---|
| 2 | 1 | akiss | |
| 3 | 1 | akiss | # Usage: |
| 4 | 1 | akiss | # ------ |
| 5 | 1 | akiss | # ./orient_sepals.sh directory filetype |
| 6 | 1 | akiss | # filetype = '.tif' or '.inr.gz' |
| 7 | 1 | akiss | |
| 8 | 1 | akiss | |
| 9 | 1 | akiss | indir=$1 |
| 10 | 1 | akiss | filetype=$2 |
| 11 | 10 | akiss | imagetype=$3 |
| 12 | 1 | akiss | |
| 13 | 4 | akiss | outdir=$indir'_oriented-sepals' |
| 14 | 1 | akiss | |
| 15 | 4 | akiss | mkdir $indir'/'$outdir |
| 16 | 1 | akiss | |
| 17 | 1 | akiss | cd $indir |
| 18 | 1 | akiss | |
| 19 | 1 | akiss | logfile='orient_sepals-'$indir'.log' |
| 20 | 1 | akiss | date > $logfile |
| 21 | 1 | akiss | echo '--------------------------' >> $logfile |
| 22 | 1 | akiss | |
| 23 | 1 | akiss | |
| 24 | 1 | akiss | for file in *$filetype |
| 25 | 1 | akiss | do |
| 26 | 1 | akiss | echo '--------------------------' >> $logfile |
| 27 | 1 | akiss | echo $file >> $logfile |
| 28 | 1 | akiss | echo $file $outdir |
| 29 | 1 | akiss | echo '--------------------------' >> $logfile |
| 30 | 10 | akiss | if test $imagetype=="grey" |
| 31 | 10 | akiss | then |
| 32 | 10 | akiss | echo 'orienting grey image '$file |
| 33 | 10 | akiss | orient_sepal.py $file $outdir $imagetype |
| 34 | 10 | akiss | else |
| 35 | 10 | akiss | echo 'orienting segmented image '$file |
| 36 | 10 | akiss | orient_sepal.py $file $outdir |
| 37 | 10 | akiss | fi |
| 38 | 1 | akiss | echo '--------------------------' >> $logfile |
| 39 | 1 | akiss | done |
| 40 | 1 | akiss | |
| 41 | 1 | akiss | |
| 42 | 1 | akiss | |
| 43 | 4 | akiss | #scp */*_oriented.inr.gz $oriented |
| 44 | 4 | akiss | |
| 45 | 1 | akiss | cd .. |