FibrilTool : an ImageJ plug-in to quantify fibrillar structures

Arezki Boudaoud, Agata Burian, Dorota Borowska-Wykręt, Magalie Uyttewaal, Roman Wrzalik, Dorota Kwiatkowska & Olivier Hamant, FibrilTool : an ImageJ plug-in to quantify fibrillar structures in raw microscopy images, Nature Protocols. Feb 2014, Vol. 9 Issue 2, p457, 7 p. DOI: 10.1038/nprot.2014.024

Contents of the repository

  • Boudaoud2014.pdf --> Boudaoud et al, Nature Protocol, 2014
  • FibrilTool.txt --> original ImageJ plugin, published in Boudaoud2014.pdf
  • FibrilTool2.ijm --> modified by Jean-Francois Gilles
  • Fibril_Tool_Batch.ijm --> an automated version of FibrilTool (Marion Louveaux). The user draws and saves all ROI first and then he lets the macro compute
    automatically microtubule orientation on the set of ROIs.
  • Fibril_Tool_Batch_read_me.pdf --> documentation for the above automated version.