Bug #3169

PlotSpecif, R, broken pipe error

Added by Matthieu Decorde about 1 month ago. Updated about 1 month ago.

Status:New Start date:10/08/2021
Priority:High Due date:
Assignee:- % Done:

80%

Category:Stats / R Spent time: -
Target version:TXM 0.8.2

Description

  • (BP 2021-06-29 VM Windows 10, TXM 0.8.2 2021-06-18 15h00, TXM 0.8.1.202106181500) Pb d'exécution, j'obtiens la stacktrace suivante :
    Compiling SpecificitiesFileMacro.groovy...
    Exécution du script Groovy SpecificitiesFileMacro.groovy…
    C:\Program Files\TXM-0.8.2beta
    f    F    t    T    mode    comp    sign    P(f')    P(f'<>mode)    specificity    specif
    java.net.SocketException: Connection reset
        at java.net.SocketInputStream.read(Unknown Source)
        at java.net.SocketInputStream.read(Unknown Source)
        at java.net.SocketInputStream.read(Unknown Source)
        at org.rosuda.REngine.Rserve.protocol.RTalk.request(RTalk.java:213)
        at org.rosuda.REngine.Rserve.protocol.RTalk.request(RTalk.java:180)
        at org.rosuda.REngine.Rserve.protocol.RTalk.request(RTalk.java:250)
        at org.rosuda.REngine.Rserve.RConnection.eval(RConnection.java:231)
        at org.txm.statsengine.r.core.RWorkspace.safeEval(RWorkspace.java:1557)
        at org.txm.statsengine.r.core.RWorkspace.eval(RWorkspace.java:1142)
        at org.txm.statsengine.r.core.RWorkspace.plot(RWorkspace.java:435)
        at org.txm.statsengine.r.core.RWorkspace.plot(RWorkspace.java:398)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
        at java.lang.reflect.Method.invoke(Unknown Source)
        at org.codehaus.groovy.runtime.callsite.PlainObjectMetaMethodSite.doInvoke(PlainObjectMetaMethodSite.java:43)
        ...
        at org.txm.macro.r.SpecificitiesFileMacro$_run_closure1.doCall(SpecificitiesFileMacro.groovy:58)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
        at java.lang.reflect.Method.invoke(Unknown Source)
        at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:104)
        at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:326)
        at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:264)
        at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1041)
        at groovy.lang.Closure.call(Closure.java:421)
        at groovy.lang.Closure.call(Closure.java:437)
        at org.codehaus.groovy.runtime.DefaultGroovyMethods.callClosureForLine(DefaultGroovyMethods.java:5936)
        ...
        at org.txm.macro.r.SpecificitiesFileMacro.run(SpecificitiesFileMacro.groovy:40)
        at org.txm.rcp.handlers.scripts.ExecuteGroovyScript$1.run(ExecuteGroovyScript.java:268)
        at org.eclipse.core.internal.jobs.Worker.run(Worker.java:63)
    org.rosuda.REngine.Rserve.RserveException: eval failed
        at org.rosuda.REngine.Rserve.RConnection.eval(RConnection.java:234)
        at org.txm.statsengine.r.core.RWorkspace.safeEval(RWorkspace.java:1557)
        at org.txm.statsengine.r.core.RWorkspace.eval(RWorkspace.java:1142)
        at org.txm.statsengine.r.core.RWorkspace.plot(RWorkspace.java:435)
        at org.txm.statsengine.r.core.RWorkspace.plot(RWorkspace.java:398)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
        at java.lang.reflect.Method.invoke(Unknown Source)
        ...
        at org.txm.macro.r.SpecificitiesFileMacro$_run_closure1.doCall(SpecificitiesFileMacro.groovy:58)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
        at java.lang.reflect.Method.invoke(Unknown Source)
        at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:104)
        at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:326)
        at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:264)
        at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1041)
        at groovy.lang.Closure.call(Closure.java:421)
        at groovy.lang.Closure.call(Closure.java:437)
        ...
        at org.txm.macro.r.SpecificitiesFileMacro.run(SpecificitiesFileMacro.groovy:40)
        at org.txm.rcp.handlers.scripts.ExecuteGroovyScript$1.run(ExecuteGroovyScript.java:268)
        at org.eclipse.core.internal.jobs.Worker.run(Worker.java:63)
    java.lang.NullPointerException
        at org.txm.statsengine.r.core.RWorkspace.plot(RWorkspace.java:437)
        at org.txm.statsengine.r.core.RWorkspace.plot(RWorkspace.java:398)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
        at java.lang.reflect.Method.invoke(Unknown Source)
        ...
        at org.txm.macro.r.SpecificitiesFileMacro$_run_closure1.doCall(SpecificitiesFileMacro.groovy:58)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
        at java.lang.reflect.Method.invoke(Unknown Source)
        at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:104)
        at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:326)
        at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:264)
        at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1041)
        at groovy.lang.Closure.call(Closure.java:421)
        at groovy.lang.Closure.call(Closure.java:437)
        ...
        at org.txm.macro.r.SpecificitiesFileMacro.run(SpecificitiesFileMacro.groovy:40)
        at org.txm.rcp.handlers.scripts.ExecuteGroovyScript$1.run(ExecuteGroovyScript.java:268)
        at org.eclipse.core.internal.jobs.Worker.run(Worker.java:63)
    java.net.SocketException: Connection reset by peer: socket write error
        at java.net.SocketOutputStream.socketWrite0(Native Method)
        at java.net.SocketOutputStream.socketWrite(Unknown Source)
        at java.net.SocketOutputStream.write(Unknown Source)
        at org.rosuda.REngine.Rserve.protocol.RTalk.request(RTalk.java:205)
        at org.rosuda.REngine.Rserve.protocol.RTalk.request(RTalk.java:180)
        at org.rosuda.REngine.Rserve.protocol.RTalk.request(RTalk.java:250)
        at org.rosuda.REngine.Rserve.RConnection.eval(RConnection.java:231)
        at org.txm.statsengine.r.core.RWorkspace.safeEval(RWorkspace.java:1557)
        at org.txm.statsengine.r.core.RWorkspace.eval(RWorkspace.java:1142)
        at org.txm.statsengine.r.core.RWorkspace$eval$0.call(Unknown Source)
        at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:47)
        at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:116)
        at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:128)
        at org.txm.macro.r.SpecificitiesFileMacro$_run_closure1.doCall(SpecificitiesFileMacro.groovy:61)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
        at java.lang.reflect.Method.invoke(Unknown Source)
        at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:104)
        at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:326)
        at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:264)
        at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1041)
        at groovy.lang.Closure.call(Closure.java:421)
        at groovy.lang.Closure.call(Closure.java:437)
        ...
        at org.txm.macro.r.SpecificitiesFileMacro.run(SpecificitiesFileMacro.groovy:40)
        at org.txm.rcp.handlers.scripts.ExecuteGroovyScript$1.run(ExecuteGroovyScript.java:268)
        at org.eclipse.core.internal.jobs.Worker.run(Worker.java:63)
    org.rosuda.REngine.Rserve.RserveException: eval failed
        at org.rosuda.REngine.Rserve.RConnection.eval(RConnection.java:234)
        at org.txm.statsengine.r.core.RWorkspace.safeEval(RWorkspace.java:1557)
        at org.txm.statsengine.r.core.RWorkspace.eval(RWorkspace.java:1142)
        at org.txm.statsengine.r.core.RWorkspace$eval$0.call(Unknown Source)
        at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:47)
        at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:116)
        at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:128)
        at org.txm.macro.r.SpecificitiesFileMacro$_run_closure1.doCall(SpecificitiesFileMacro.groovy:61)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
        at java.lang.reflect.Method.invoke(Unknown Source)
        at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:104)
        at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:326)
        at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:264)
        at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1041)
        at groovy.lang.Closure.call(Closure.java:421)
        at groovy.lang.Closure.call(Closure.java:437)
        ...
        at org.txm.macro.r.SpecificitiesFileMacro.run(SpecificitiesFileMacro.groovy:40)
        at org.txm.rcp.handlers.scripts.ExecuteGroovyScript$1.run(ExecuteGroovyScript.java:268)
        at org.eclipse.core.internal.jobs.Worker.run(Worker.java:63)
    ** Erreur lors de l'exécution du script : java.lang.NullPointerException: Cannot invoke method asDouble() on null object
    Stacktrace: 
    [1]  org.txm.rcp.handlers.scripts.ExecuteGroovyScript$1.run  ExecuteGroovyScript.java, 279
    

Related issues

related to Bug #3176: R, plot, windows file New 10/20/2021

History

#1 Updated by Matthieu Decorde about 1 month ago

  • Description updated (diff)

#2 Updated by Matthieu Decorde about 1 month ago

  • % Done changed from 0 to 80

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