Bug #2195
CA command does not work
| Status: | Closed | Start date: | 05/15/2017 | |
|---|---|---|---|---|
| Priority: | High | Due date: | ||
| Assignee: | - | % Done: | 100% |
|
| Category: | Stats / R | Spent time: | - | |
| Target version: | Portal 0.6.3 |
Description
CA command does not work, error:
404: broken link "/txm/data/svg/null" address /txm/data/svg/null
catalina.out:
** Impossible de charger la librairie 'ca'org.txm.stat.engine.r.RException: ** Erreur R : "Error in library(FactoMineR) :
aucun package nommé ‘FactoMineR’ n'est trouvé
"
lors de l'évaluation de :library(FactoMineR)
org.txm.stat.StatException: ** Erreur lors du calcul de l'analyse factorielle des correspondances : ** Erreur R : "Error in loadNamespace(name) :
aucun package nommé ‘FactoMineR’ n'est trouvé
"
lors de l'évaluation de :FactoMineRCA4 <- FactoMineR::CA(LexicalTable1, graph=FALSE)
at org.txm.stat.engine.r.function.FactoMineRCA.<init>(FactoMineRCA.java:121)
at org.txm.functions.ca.CA.<init>(CA.java:170)
at org.txm.web.server.services.AFCServiceImpl.analysisComputing(AFCServiceImpl.java:89)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:587)
at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:333)
at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:303)
at com.google.gwt.user.server.rpc.RemoteServiceServlet.processPost(RemoteServiceServlet.java:373)
at com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet.doPost(AbstractRemoteServiceServlet.java:62)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:646)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:503)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:421)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1070)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:611)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:316)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.txm.stat.engine.r.RException: ** Erreur R : "Error in loadNamespace(name) :
aucun package nommé ‘FactoMineR’ n'est trouvé
"
lors de l'évaluation de :FactoMineRCA4 <- FactoMineR::CA(LexicalTable1, graph=FALSE)
at org.txm.stat.engine.r.RWorkspace.safeEval(RWorkspace.java:1435)
at org.txm.stat.engine.r.RWorkspace.eval(RWorkspace.java:1115)
at org.txm.stat.engine.r.function.FactoMineRCA.<init>(FactoMineRCA.java:119)
... 30 more
** Impossible de charger la librairie 'ca'org.txm.stat.engine.r.RException: ** Erreur R : "Error in library(FactoMineR) :
aucun package nommé ‘FactoMineR’ n'est trouvé
"
lors de l'évaluation de :library(FactoMineR)
org.txm.stat.StatException: ** Erreur lors du calcul de l'analyse factorielle des correspondances : ** Erreur R : "Error in loadNamespace(name) :
aucun package nommé ‘FactoMineR’ n'est trouvé
"
lors de l'évaluation de :FactoMineRCA8 <- FactoMineR::CA(LexicalTable5, graph=FALSE)
at org.txm.stat.engine.r.function.FactoMineRCA.<init>(FactoMineRCA.java:121)
at org.txm.functions.ca.CA.<init>(CA.java:170)
at org.txm.web.server.services.AFCServiceImpl.analysisComputing(AFCServiceImpl.java:89)
at org.txm.web.server.services.AFCServiceImpl.getValeursPropres(AFCServiceImpl.java:152)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:587)
at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:333)
at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:303)
at com.google.gwt.user.server.rpc.RemoteServiceServlet.processPost(RemoteServiceServlet.java:373)
at com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet.doPost(AbstractRemoteServiceServlet.java:62)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:646)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:503)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:421)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1070)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:611)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:316)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.txm.stat.engine.r.RException: ** Erreur R : "Error in loadNamespace(name) :
aucun package nommé ‘FactoMineR’ n'est trouvé
"
lors de l'évaluation de :FactoMineRCA8 <- FactoMineR::CA(LexicalTable5, graph=FALSE)
at org.txm.stat.engine.r.RWorkspace.safeEval(RWorkspace.java:1435)
at org.txm.stat.engine.r.RWorkspace.eval(RWorkspace.java:1115)
at org.txm.stat.engine.r.function.FactoMineRCA.<init>(FactoMineRCA.java:119)
... 31 more
Trying to install FactoMineR in R but got this error:
package FactoMineR is not available (for R version 3.1.1)
R version:
platform x86_64-pc-linux-gnu arch x86_64 os linux-gnu system x86_64, linux-gnu status major 3 minor 1.1 year 2014 month 07 day 10 svn rev 66115 language R version.string R version 3.1.1 (2014-07-10) nickname Sock it to Me
History
#1 Updated by Sebastien Jacquot over 6 years ago
- Description updated (diff)
#2 Updated by Sebastien Jacquot over 6 years ago
Updated R to 3.4.0 and successuflly installed FactoMineR but CA still doesn't work with this error:
** Impossible de charger la librairie 'ca'org.txm.stat.engine.r.RException: ** Erreur R : "Error : Ceci est R 3.1.1, le package FactoMineR nécessite >= 3.3.0
"
lors de l'évaluation de :library(FactoMineR)
org.txm.stat.StatException: ** Erreur lors du calcul de l'analyse factorielle des correspondances : ** Erreur R : "Error in dyn.load(file, DLLpath = DLLpath, ...) :
impossible de charger l'objet partagé '/usr/lib/R/library/grid/libs/grid.so':
/usr/lib/R/library/grid/libs/grid.so: undefined symbol: Rf_installChar
"
lors de l'évaluation de :FactoMineRCA4 <- FactoMineR::CA(LexicalTable1, graph=FALSE)
at org.txm.stat.engine.r.function.FactoMineRCA.<init>(FactoMineRCA.java:121)
at org.txm.functions.ca.CA.<init>(CA.java:170)
at org.txm.web.server.services.AFCServiceImpl.analysisComputing(AFCServiceImpl.java:89)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:587)
at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:333)
at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:303)
at com.google.gwt.user.server.rpc.RemoteServiceServlet.processPost(RemoteServiceServlet.java:373)
at com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet.doPost(AbstractRemoteServiceServlet.java:62)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:646)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:503)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:421)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1070)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:611)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:316)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.txm.stat.engine.r.RException: ** Erreur R : "Error in dyn.load(file, DLLpath = DLLpath, ...) :
impossible de charger l'objet partagé '/usr/lib/R/library/grid/libs/grid.so':
/usr/lib/R/library/grid/libs/grid.so: undefined symbol: Rf_installChar
"
lors de l'évaluation de :FactoMineRCA4 <- FactoMineR::CA(LexicalTable1, graph=FALSE)
at org.txm.stat.engine.r.RWorkspace.safeEval(RWorkspace.java:1435)
at org.txm.stat.engine.r.RWorkspace.eval(RWorkspace.java:1115)
at org.txm.stat.engine.r.function.FactoMineRCA.<init>(FactoMineRCA.java:119)
... 30 more
textometry.properties contains:
r_path_to_executable=/usr/bin/R
launching /usr/bin/R and checking the R version displays well 3.4.0.
Is there any way to know which R is used by the toolbox?
#3 Updated by Matthieu Decorde over 3 years ago
- Target version changed from Portal 0.6.2 to Portal 0.7
#4 Updated by Serge Heiden about 3 years ago
- Target version changed from Portal 0.7 to Portal 0.6.3
#5 Updated by Matthieu Decorde about 3 years ago
- % Done changed from 0 to 10
#6 Updated by Matthieu Decorde over 2 years ago
- % Done changed from 10 to 80
#7 Updated by Sebastien Jacquot about 1 month ago
- Status changed from New to Closed
- % Done changed from 80 to 100
Tested on Firefox and Chrome.