Révision 544
| tmp/org.txm.specificities.core/src/org/txm/specificities/core/messages/SpecificitiesCoreMessages.java (revision 544) | ||
|---|---|---|
| 5 | 5 |
|
| 6 | 6 |
|
| 7 | 7 |
|
| 8 |
|
|
| 8 |
/** |
|
| 9 |
* |
|
| 10 |
* @author sjacquot |
|
| 11 |
* |
|
| 12 |
*/ |
|
| 9 | 13 |
public class SpecificitiesCoreMessages extends NLS {
|
| 10 | 14 |
|
| 11 | 15 |
private static final String BUNDLE_NAME = "org.txm.specificities.core.messages.messages"; //$NON-NLS-1$ |
| tmp/org.txm.specificities.core/src/org/txm/specificities/core/functions/Specificities.java (revision 544) | ||
|---|---|---|
| 37 | 37 |
import java.util.Arrays; |
| 38 | 38 |
import java.util.List; |
| 39 | 39 |
|
| 40 |
import org.txm.chartsengine.core.results.ChartResult; |
|
| 41 |
import org.txm.core.results.TXMParameters; |
|
| 40 |
import org.txm.core.results.TXMResult; |
|
| 42 | 41 |
import org.txm.lexicaltable.core.functions.LexicalTable; |
| 43 | 42 |
import org.txm.lexicon.core.corpusengine.cqp.Lexicon; |
| 44 | 43 |
import org.txm.searchengine.cqp.clientExceptions.CqiClientException; |
| ... | ... | |
| 51 | 50 |
import org.txm.statsengine.core.utils.ArrayIndex; |
| 52 | 51 |
import org.txm.statsengine.core.utils.CheckArray; |
| 53 | 52 |
import org.txm.statsengine.r.core.RWorkspace; |
| 53 |
import org.txm.utils.logger.Log; |
|
| 54 | 54 |
|
| 55 | 55 |
/** |
| 56 |
* Hold specificities computation result. |
|
| 56 |
* Holds specificities computation result.
|
|
| 57 | 57 |
* |
| 58 | 58 |
* @author mdecorde |
| 59 | 59 |
* @author sloiseau |
| 60 | 60 |
* |
| 61 | 61 |
*/ |
| 62 |
public class Specificities extends ChartResult {
|
|
| 62 |
public class Specificities extends TXMResult {
|
|
| 63 | 63 |
|
| 64 | 64 |
public static int MAXSPECIF = 1000; |
| 65 | 65 |
|
| ... | ... | |
| 109 | 109 |
@Deprecated |
| 110 | 110 |
private BufferedWriter writer; |
| 111 | 111 |
|
| 112 |
|
|
| 113 |
protected int pMaxScore; |
|
| 114 |
|
|
| 115 |
|
|
| 112 | 116 |
/** |
| 113 |
* The selected type names to focus on. |
|
| 117 |
* Specificities. |
|
| 118 |
* |
|
| 119 |
* @param table the table |
|
| 120 |
* @return the specificities result |
|
| 121 |
* @throws CqiClientException the cqi client exception |
|
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* @throws StatException the stat exception |
|
| 114 | 123 |
*/ |
| 115 |
protected String[] selectedTypeNames; |
|
| 124 |
public Specificities(LexicalTable table, int maxScore) throws CqiClientException, StatException {
|
|
| 125 |
super(table); |
|
| 126 |
this.table = table; |
|
| 127 |
this.pMaxScore = maxScore; |
|
| 128 |
} |
|
| 116 | 129 |
|
| 117 |
/** |
|
| 118 |
* The selected part names to focus on. |
|
| 119 |
*/ |
|
| 120 |
protected String[] selectedPartNames; |
|
| 121 | 130 |
|
| 122 |
/** |
|
| 123 |
* The selected specificities indices to focus on. |
|
| 124 |
*/ |
|
| 125 |
protected double[][] selectedSpecificitiesIndex; |
|
| 126 | 131 |
|
| 127 |
private int pMaxScore; |
|
| 128 | 132 |
|
| 133 |
@Override |
|
| 129 | 134 |
protected boolean _compute(boolean update) throws Exception {
|
| 130 | 135 |
SpecificitiesR si = new SpecificitiesR(table.getData()); |
| 131 | 136 |
|
| ... | ... | |
| 138 | 143 |
// System.out.println("prop="+table.getProperty());
|
| 139 | 144 |
init(symbol, specIndex, table, Arrays |
| 140 | 145 |
.asList(table.getRowNames().asStringsArray()), Arrays.asList(table.getColNames().asStringsArray()), table.getProperty().getName(), this.pMaxScore); |
| 141 |
} else {
|
|
| 146 |
} |
|
| 147 |
else {
|
|
| 142 | 148 |
init(si.getSymbol(), specIndex, table, Arrays |
| 143 | 149 |
.asList(table.getRowNames().asStringsArray()), Arrays.asList(table.getColNames().asStringsArray()), |
| 144 | 150 |
"TLNONAME: " + table.getProperty().getName(), this.pMaxScore); //$NON-NLS-1$ |
| ... | ... | |
| 146 | 152 |
return true; |
| 147 | 153 |
} |
| 148 | 154 |
|
| 149 |
// /** |
|
| 150 |
// * Compute the specificity index for all the cells of a complete lexical |
|
| 151 |
// * table, as defined by a {@link Partition} and a {@link Property}.
|
|
| 152 |
// * |
|
| 153 |
// * This may be used for extracting, for all part, the forms the most or the |
|
| 154 |
// * less specif ic. |
|
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// * |
|
| 156 |
// * @param partition the partition |
|
| 157 |
// * @param analysisProperty the analysis property |
|
| 158 |
// * @param formFocus the form focus |
|
| 159 |
// * @param partsFocus the parts focus |
|
| 160 |
// * @param Fmin the fmin |
|
| 161 |
// * @return the specificites result |
|
| 162 |
// * @throws CqiClientException the cqi client exception |
|
| 163 |
// * @throws StatException the stat exception |
|
| 164 |
// */ |
|
| 165 |
// public Specificities(Partition partition, Property analysisProperty, int Fmin, int maxScore) throws Exception {
|
|
| 166 |
// this(LexicalTableFactory.getLexicalTable(partition, analysisProperty, Fmin), maxScore); |
|
| 167 |
// |
|
| 168 |
// if (partition.getParts().size() < 2) {
|
|
| 169 |
// throw new IllegalArgumentException(SpecificitiesCoreMessages.ComputeError_NEED_AT_LEAST_2_PARTS); |
|
| 170 |
// } |
|
| 171 |
// } |
|
| 172 |
|
|
| 173 | 155 |
/** |
| 174 |
* Specificites. |
|
| 175 |
* |
|
| 176 |
* @param table the table |
|
| 177 |
* @return the specificites result |
|
| 178 |
* @throws CqiClientException the cqi client exception |
|
| 179 |
* @throws StatException the stat exception |
|
| 180 |
*/ |
|
| 181 |
public Specificities(LexicalTable table, int maxScore) throws CqiClientException, StatException {
|
|
| 182 |
super(table); |
|
| 183 |
if (table.getNColumns() < 2) {
|
|
| 184 |
throw new IllegalArgumentException(SpecificitiesCoreMessages.ComputeError_NEED_AT_LEAST_2_PARTS); |
|
| 185 |
} |
|
| 186 |
this.table = table; |
|
| 187 |
this.pMaxScore = maxScore; // TODO: move this to setParamters(...) |
|
| 188 |
} |
|
| 189 |
|
|
| 190 |
// /** |
|
| 191 |
// * Specificites. |
|
| 192 |
// * |
|
| 193 |
// * @param corpus the corpus |
|
| 194 |
// * @param subcorpus the subcorpus |
|
| 195 |
// * @param property the property |
|
| 196 |
// * @return the specificites result |
|
| 197 |
// * @throws CqiClientException the cqi client exception |
|
| 198 |
// * @throws StatException the stat exception |
|
| 199 |
// * @throws REXPMismatchException |
|
| 200 |
// * @throws RserveException |
|
| 201 |
// */ |
|
| 202 |
// public Specificities(Corpus corpus, Subcorpus subcorpus, Property property, int maxScore) throws Exception {
|
|
| 203 |
// super(corpus); |
|
| 204 |
// Lexicon totalFrequencies = Lexicon.getLexicon(corpus, property); |
|
| 205 |
// Lexicon subFrequencies = Lexicon.getLexicon(subcorpus, property); |
|
| 206 |
// |
|
| 207 |
// //System.out.println("Send corpus vector");
|
|
| 208 |
// Vector totalFSymbol; |
|
| 209 |
// Vector subFSymbol; |
|
| 210 |
// try {
|
|
| 211 |
// totalFSymbol = totalFrequencies.asVector(); |
|
| 212 |
// subFSymbol = subFrequencies.asVector(); |
|
| 213 |
// } catch (StatException e) {
|
|
| 214 |
// throw new RWorkspaceException(e); |
|
| 215 |
// } |
|
| 216 |
// |
|
| 217 |
// SpecificitiesR si = new SpecificitiesR(totalFSymbol, subFSymbol); |
|
| 218 |
// double[][] specIndex = si.getScores(); |
|
| 219 |
// |
|
| 220 |
// init(si.getSymbol(), specIndex, totalFrequencies, subFrequencies, corpus.getName()+"\\"+subcorpus.getName(), maxScore); |
|
| 221 |
// } |
|
| 222 |
// |
|
| 223 |
|
|
| 224 |
// /** |
|
| 225 |
// * Instantiates a new specificities result : for subcorpus specificities. |
|
| 226 |
// * |
|
| 227 |
// * @param symbol the symbol |
|
| 228 |
// * @param specIndex the spec index |
|
| 229 |
// * @param lexicon the lexicon |
|
| 230 |
// * @param subLexicon the sub lexicon |
|
| 231 |
// * @param name the name |
|
| 232 |
// */ |
|
| 233 |
// protected void init(String symbol, double[][] specIndex, Lexicon lexicon, Lexicon subLexicon, String name, int maxScore) {
|
|
| 234 |
// |
|
| 235 |
// //super(subLexicon.getCorpus()); |
|
| 236 |
// this.corpus = subLexicon.getCorpus(); |
|
| 237 |
// this.symbol = symbol; |
|
| 238 |
// this.indices = specIndex; |
|
| 239 |
// |
|
| 240 |
// this.lexicon = lexicon; |
|
| 241 |
// this.subLexicon = subLexicon; |
|
| 242 |
// this.corpus = lexicon.getCorpus(); |
|
| 243 |
// this.subCorpus = subLexicon.getCorpus(); |
|
| 244 |
// this.name = name; |
|
| 245 |
// |
|
| 246 |
// int MAX = MAXSPECIF; |
|
| 247 |
// int MIN = -MAXSPECIF; |
|
| 248 |
// |
|
| 249 |
// if (maxScore > 0) {
|
|
| 250 |
// MAX = maxScore; |
|
| 251 |
// MIN = -maxScore; |
|
| 252 |
// } |
|
| 253 |
// for (int i = 0 ; i < indices.length ; i++) {
|
|
| 254 |
// for (int j = 0 ; j < indices[i].length ; j++) {
|
|
| 255 |
// if (indices[i][j] > MAX) {
|
|
| 256 |
// indices[i][j] = MAX; |
|
| 257 |
// } else if (indices[i][j] < MIN) {
|
|
| 258 |
// indices[i][j] = MIN; |
|
| 259 |
// } |
|
| 260 |
// } |
|
| 261 |
// } |
|
| 262 |
// |
|
| 263 |
// this.table = null; |
|
| 264 |
// } |
|
| 265 |
|
|
| 266 |
/** |
|
| 267 | 156 |
* Instantiates a new specificities result. |
| 268 | 157 |
* |
| 269 | 158 |
* @param symbol the symbol |
| ... | ... | |
| 279 | 168 |
* @param maxScore if abs(score) > maxScore -> score = +/- maxScore |
| 280 | 169 |
* @throws StatException the stat exception |
| 281 | 170 |
*/ |
| 282 |
protected void init(String symbol, double[][] specIndex, LexicalTable table, |
|
| 283 |
List<String> typeFocus, List<String> partFocus, String name, int maxScore) |
|
| 284 |
throws StatException {
|
|
| 171 |
protected void init(String symbol, double[][] specIndex, LexicalTable table, List<String> typeFocus, List<String> partFocus, String name, int maxScore) throws StatException {
|
|
| 285 | 172 |
|
| 286 | 173 |
this.table = table; |
| 287 | 174 |
this.symbol = symbol; |
| ... | ... | |
| 329 | 216 |
SpecificitiesCoreMessages.bind(SpecificitiesCoreMessages.ComputeError_FOUND_AND_WANTED_ROWS_MISMATCH, typeFocus.size(), specIndex.length)); |
| 330 | 217 |
} |
| 331 | 218 |
|
| 332 |
rowindex = ArrayIndex.getIndex( |
|
| 333 |
table.getRowNames().asStringsArray(), typeFocus |
|
| 334 |
.toArray(new String[] {}));
|
|
| 219 |
rowindex = ArrayIndex.getIndex(table.getRowNames().asStringsArray(), typeFocus.toArray(new String[] {}));
|
|
| 335 | 220 |
for (int i : rowindex) {
|
| 336 | 221 |
if (i == -1) {
|
| 337 |
throw new IllegalArgumentException( |
|
| 338 |
SpecificitiesCoreMessages.SpecificitesResult_6); |
|
| 222 |
throw new IllegalArgumentException(SpecificitiesCoreMessages.SpecificitesResult_6); |
|
| 339 | 223 |
} |
| 340 | 224 |
} |
| 341 | 225 |
} |
| ... | ... | |
| 415 | 299 |
*/ |
| 416 | 300 |
public String[] getTypeNames() throws StatException {
|
| 417 | 301 |
if (table != null) {
|
| 418 |
return (rownames != null && rownames.size() != 0) ? rownames |
|
| 419 |
.toArray(new String[] {}) : table.getRowNames()
|
|
| 420 |
.asStringsArray(); |
|
| 302 |
return (rownames != null && rownames.size() != 0) ? rownames.toArray(new String[] {}) : table.getRowNames().asStringsArray();
|
|
| 421 | 303 |
} else {
|
| 422 | 304 |
return lexicon.getForms(); |
| 423 | 305 |
} |
| ... | ... | |
| 432 | 314 |
public String[] getPartShortNames() throws StatException {
|
| 433 | 315 |
// System.out.println("get col names: "+table);
|
| 434 | 316 |
// System.out.println("colnames: "+colnames);
|
| 435 |
if (colnames != null && colnames.size() > 0) |
|
| 317 |
if (colnames != null && colnames.size() > 0) {
|
|
| 436 | 318 |
return colnames.toArray(new String[]{});
|
| 319 |
} |
|
| 437 | 320 |
else if (table != null) {
|
| 438 | 321 |
// return (colnames != null && colnames.size() != 0) ? |
| 439 | 322 |
// colnames.toArray(new String[]{}) :
|
| ... | ... | |
| 445 | 328 |
* parts.get(i).getShortName(); } |
| 446 | 329 |
*/ |
| 447 | 330 |
return table.getColNames().asStringsArray(); |
| 448 |
} else {
|
|
| 449 |
if (this.subCorpus != null) |
|
| 450 |
return new String[] { this.subCorpus.getName(),
|
|
| 451 |
this.corpus.getName() + " \\ " + this.subCorpus.getName() }; //$NON-NLS-1$ |
|
| 331 |
} else if (this.subCorpus != null) {
|
|
| 332 |
return new String[] { this.subCorpus.getName(),this.corpus.getName() + " \\ " + this.subCorpus.getName() }; //$NON-NLS-1$
|
|
| 452 | 333 |
} |
| 453 | 334 |
return new String[0]; |
| 454 | 335 |
} |
| ... | ... | |
| 550 | 431 |
} |
| 551 | 432 |
} |
| 552 | 433 |
|
| 553 |
/** |
|
| 554 |
* To txt. |
|
| 555 |
* |
|
| 556 |
* @param outfile the outfile |
|
| 557 |
* @param encoding the encoding |
|
| 558 |
* @param colseparator the colseparator |
|
| 559 |
* @param txtseparator the txtseparator |
|
| 560 |
* @return true, if successful |
|
| 561 |
* @throws StatException the stat exception |
|
| 562 |
*/ |
|
| 434 |
@Override |
|
| 563 | 435 |
public boolean toTxt(File outfile, String encoding, String colseparator, String txtseparator) throws StatException {
|
| 564 | 436 |
|
| 565 | 437 |
// NK: Declared as class attribute to perform a clean if the operation is interrupted |
| ... | ... | |
| 613 | 485 |
return true; |
| 614 | 486 |
} |
| 615 | 487 |
|
| 616 |
|
|
| 617 |
|
|
| 618 |
|
|
| 619 | 488 |
/** |
| 620 |
* Gets the symbol. |
|
| 621 |
* |
|
| 622 |
* @return the symbol |
|
| 623 |
*/ |
|
| 624 |
public String getSymbol() {
|
|
| 625 |
return symbol; |
|
| 626 |
} |
|
| 627 |
|
|
| 628 |
/** |
|
| 629 |
* Gets the sorted part indexes. |
|
| 630 |
* |
|
| 631 |
* @return the sorted part indexes |
|
| 632 |
*/ |
|
| 633 |
public int[] getSortedPartIndexes() {
|
|
| 634 |
|
|
| 635 |
try {
|
|
| 636 |
int[] indexes = new int[this.getNbrPart()]; |
|
| 637 |
String[] partsname = this.getPartShortNames().clone(); |
|
| 638 |
for (int i = 0; i < this.getNbrPart(); i++) {
|
|
| 639 |
indexes[i] = i; |
|
| 640 |
} |
|
| 641 |
|
|
| 642 |
for (int i = 0; i < this.getNbrPart(); i++) {
|
|
| 643 |
int imin = i; |
|
| 644 |
for (int j = i; j < this.getNbrPart(); j++) {
|
|
| 645 |
if (partsname[imin].compareTo(partsname[j]) > 0) {
|
|
| 646 |
imin = j; |
|
| 647 |
} |
|
| 648 |
} |
|
| 649 |
String tmp = partsname[i]; |
|
| 650 |
partsname[i] = partsname[imin]; |
|
| 651 |
partsname[imin] = tmp; |
|
| 652 |
|
|
| 653 |
int tmp2 = indexes[i]; |
|
| 654 |
indexes[i] = indexes[imin]; |
|
| 655 |
indexes[imin] = tmp2; |
|
| 656 |
} |
|
| 657 |
return indexes; |
|
| 658 |
} catch (StatException e) {
|
|
| 659 |
org.txm.utils.logger.Log.printStackTrace(e); |
|
| 660 |
} |
|
| 661 |
return new int[0]; |
|
| 662 |
} |
|
| 663 |
|
|
| 664 |
/** |
|
| 665 | 489 |
* Sets the corpus. |
| 666 | 490 |
* |
| 667 | 491 |
* @param subcorpus2 the new corpus |
| ... | ... | |
| 691 | 515 |
} |
| 692 | 516 |
} |
| 693 | 517 |
|
| 694 |
/** |
|
| 695 |
* @return the selectedTypeNames |
|
| 696 |
*/ |
|
| 697 |
public String[] getSelectedTypeNames() {
|
|
| 698 |
return selectedTypeNames; |
|
| 699 |
} |
|
| 700 | 518 |
|
| 701 |
/** |
|
| 702 |
* @param selectedTypeNames the selectedTypeNames to set |
|
| 703 |
*/ |
|
| 704 |
public void setSelectedTypeNames(String[] selectedTypeNames) {
|
|
| 705 |
this.selectedTypeNames = selectedTypeNames; |
|
| 706 |
} |
|
| 707 | 519 |
|
| 708 |
/** |
|
| 709 |
* @return the selectedPartNames |
|
| 710 |
*/ |
|
| 711 |
public String[] getSelectedPartNames() {
|
|
| 712 |
return selectedPartNames; |
|
| 713 |
} |
|
| 714 | 520 |
|
| 715 |
/** |
|
| 716 |
* @param selectedPartNames the selectedPartNames to set |
|
| 717 |
*/ |
|
| 718 |
public void setSelectedPartNames(String[] selectedPartNames) {
|
|
| 719 |
this.selectedPartNames = selectedPartNames; |
|
| 720 |
} |
|
| 521 |
// /** |
|
| 522 |
// * Gets the symbol. |
|
| 523 |
// * |
|
| 524 |
// * @return the symbol |
|
| 525 |
// */ |
|
| 526 |
// public String getSymbol() {
|
|
| 527 |
// return symbol; |
|
| 528 |
// } |
|
| 721 | 529 |
|
| 722 |
/** |
|
| 723 |
* @return the selectedSpecificitiesIndex |
|
| 724 |
*/ |
|
| 725 |
public double[][] getSelectedSpecificitiesIndex() {
|
|
| 726 |
return selectedSpecificitiesIndex; |
|
| 727 |
} |
|
| 728 |
|
|
| 729 |
/** |
|
| 730 |
* @param selectedSpecificitiesIndex the selectedSpecificitiesIndex to set |
|
| 731 |
*/ |
|
| 732 |
public void setSelectedSpecificitiesIndex(double[][] selectedSpecificitiesIndex) {
|
|
| 733 |
this.selectedSpecificitiesIndex = selectedSpecificitiesIndex; |
|
| 734 |
} |
|
| 735 |
|
|
| 736 |
|
|
| 530 |
// /** |
|
| 531 |
// * Gets the sorted part indexes. |
|
| 532 |
// * |
|
| 533 |
// * @return the sorted part indexes |
|
| 534 |
// */ |
|
| 535 |
// public int[] getSortedPartIndexes() {
|
|
| 536 |
// |
|
| 537 |
// try {
|
|
| 538 |
// int[] indexes = new int[this.getNbrPart()]; |
|
| 539 |
// String[] partsname = this.getPartShortNames().clone(); |
|
| 540 |
// for (int i = 0; i < this.getNbrPart(); i++) {
|
|
| 541 |
// indexes[i] = i; |
|
| 542 |
// } |
|
| 543 |
// |
|
| 544 |
// for (int i = 0; i < this.getNbrPart(); i++) {
|
|
| 545 |
// int imin = i; |
|
| 546 |
// for (int j = i; j < this.getNbrPart(); j++) {
|
|
| 547 |
// if (partsname[imin].compareTo(partsname[j]) > 0) {
|
|
| 548 |
// imin = j; |
|
| 549 |
// } |
|
| 550 |
// } |
|
| 551 |
// String tmp = partsname[i]; |
|
| 552 |
// partsname[i] = partsname[imin]; |
|
| 553 |
// partsname[imin] = tmp; |
|
| 554 |
// |
|
| 555 |
// int tmp2 = indexes[i]; |
|
| 556 |
// indexes[i] = indexes[imin]; |
|
| 557 |
// indexes[imin] = tmp2; |
|
| 558 |
// } |
|
| 559 |
// return indexes; |
|
| 560 |
// } catch (StatException e) {
|
|
| 561 |
// org.txm.utils.logger.Log.printStackTrace(e); |
|
| 562 |
// } |
|
| 563 |
// return new int[0]; |
|
| 564 |
// } |
|
| 565 |
|
|
| 737 | 566 |
@Override |
| 738 | 567 |
public String getName() {
|
| 568 |
// FIXME: to define |
|
| 569 |
// if (this.specificitiesResult.getLexicalTable()!= null && this.specificitiesResult.getLexicalTable().getPartition() != null) {
|
|
| 570 |
// setPartName(this.specificitiesResult.getLexicalTable().getPartition().getName()+": "+specificitiesResult.getName()); //$NON-NLS-1$ |
|
| 571 |
// } else if (spinput.getSubcorpus() != null) {
|
|
| 572 |
// setPartName(spinput.getSubcorpus().getName()+": "+specificitiesResult.getName()); //$NON-NLS-1$ |
|
| 573 |
// } else {
|
|
| 574 |
// setPartName(specificitiesResult.getName()); |
|
| 575 |
// } |
|
| 739 | 576 |
return name; |
| 740 | 577 |
} |
| 741 | 578 |
|
| ... | ... | |
| 743 | 580 |
|
| 744 | 581 |
@Override |
| 745 | 582 |
public String getSimpleName() {
|
| 583 |
// FIXME: to define |
|
| 746 | 584 |
return this.getName(); |
| 747 | 585 |
} |
| 748 | 586 |
|
| 749 | 587 |
@Override |
| 750 | 588 |
public String getDetails() {
|
| 589 |
// FIXME: to define |
|
| 751 | 590 |
return this.getName(); |
| 752 | 591 |
} |
| 753 | 592 |
|
| 754 | 593 |
@Override |
| 755 | 594 |
public boolean canCompute() {
|
| 756 |
return table != null; |
|
| 595 |
|
|
| 596 |
if(this.table == null) {
|
|
| 597 |
return false; |
|
| 598 |
} |
|
| 599 |
|
|
| 600 |
if (table.getNColumns() < 2) {
|
|
| 601 |
Log.severe(SpecificitiesCoreMessages.ComputeError_NEED_AT_LEAST_2_PARTS); |
|
| 602 |
return false; |
|
| 603 |
} |
|
| 604 |
|
|
| 605 |
return true; |
|
| 757 | 606 |
} |
| 758 | 607 |
|
| 759 |
@Override |
|
| 760 |
public boolean setParameters(TXMParameters parameters) {
|
|
| 761 |
return false; |
|
| 608 |
|
|
| 609 |
|
|
| 610 |
|
|
| 611 |
/** |
|
| 612 |
* @param maxScore the pMaxScore to set |
|
| 613 |
*/ |
|
| 614 |
public void setMaxScore(int maxScore) {
|
|
| 615 |
this.pMaxScore = maxScore; |
|
| 762 | 616 |
} |
| 617 |
|
|
| 763 | 618 |
} |
| tmp/org.txm.specificities.core/src/org/txm/specificities/core/functions/SpecificitiesSelection.java (revision 544) | ||
|---|---|---|
| 1 |
/** |
|
| 2 |
* |
|
| 3 |
*/ |
|
| 4 |
package org.txm.specificities.core.functions; |
|
| 5 |
|
|
| 6 |
import java.io.File; |
|
| 7 |
|
|
| 8 |
import org.txm.chartsengine.core.results.ChartResult; |
|
| 9 |
|
|
| 10 |
/** |
|
| 11 |
* A selection from a Specificities result dedicated to export or chart creation. |
|
| 12 |
* @author sjacquot |
|
| 13 |
* |
|
| 14 |
*/ |
|
| 15 |
public class SpecificitiesSelection extends ChartResult {
|
|
| 16 |
|
|
| 17 |
|
|
| 18 |
/** |
|
| 19 |
* The selected type names to focus on. |
|
| 20 |
*/ |
|
| 21 |
protected String[] selectedTypeNames; |
|
| 22 |
|
|
| 23 |
/** |
|
| 24 |
* The selected part names to focus on. |
|
| 25 |
*/ |
|
| 26 |
protected String[] selectedPartNames; |
|
| 27 |
|
|
| 28 |
/** |
|
| 29 |
* The selected specificities indices to focus on. |
|
| 30 |
*/ |
|
| 31 |
protected double[][] selectedSpecificitiesIndex; |
|
| 32 |
|
|
| 33 |
|
|
| 34 |
|
|
| 35 |
|
|
| 36 |
/** |
|
| 37 |
* Creates an empty SpecificitiesSelection. |
|
| 38 |
* @param parent |
|
| 39 |
*/ |
|
| 40 |
public SpecificitiesSelection(Specificities parent) {
|
|
| 41 |
super(parent); |
|
| 42 |
} |
|
| 43 |
|
|
| 44 |
|
|
| 45 |
|
|
| 46 |
/** |
|
| 47 |
* @return the selectedTypeNames |
|
| 48 |
*/ |
|
| 49 |
public String[] getSelectedTypeNames() {
|
|
| 50 |
return selectedTypeNames; |
|
| 51 |
} |
|
| 52 |
|
|
| 53 |
/** |
|
| 54 |
* @param selectedTypeNames the selectedTypeNames to set |
|
| 55 |
*/ |
|
| 56 |
public void setSelectedTypeNames(String[] selectedTypeNames) {
|
|
| 57 |
this.selectedTypeNames = selectedTypeNames; |
|
| 58 |
} |
|
| 59 |
|
|
| 60 |
/** |
|
| 61 |
* @return the selectedPartNames |
|
| 62 |
*/ |
|
| 63 |
public String[] getSelectedPartNames() {
|
|
| 64 |
return selectedPartNames; |
|
| 65 |
} |
|
| 66 |
|
|
| 67 |
/** |
|
| 68 |
* @param selectedPartNames the selectedPartNames to set |
|
| 69 |
*/ |
|
| 70 |
public void setSelectedPartNames(String[] selectedPartNames) {
|
|
| 71 |
this.selectedPartNames = selectedPartNames; |
|
| 72 |
} |
|
| 73 |
|
|
| 74 |
/** |
|
| 75 |
* @return the selectedSpecificitiesIndex |
|
| 76 |
*/ |
|
| 77 |
public double[][] getSelectedSpecificitiesIndex() {
|
|
| 78 |
return selectedSpecificitiesIndex; |
|
| 79 |
} |
|
| 80 |
|
|
| 81 |
/** |
|
| 82 |
* @param selectedSpecificitiesIndex the selectedSpecificitiesIndex to set |
|
| 83 |
*/ |
|
| 84 |
public void setSelectedSpecificitiesIndex(double[][] selectedSpecificitiesIndex) {
|
|
| 85 |
this.selectedSpecificitiesIndex = selectedSpecificitiesIndex; |
|
| 86 |
} |
|
| 87 |
|
|
| 88 |
|
|
| 89 |
|
|
| 90 |
/* (non-Javadoc) |
|
| 91 |
* @see org.txm.core.results.TXMResult#getName() |
|
| 92 |
*/ |
|
| 93 |
@Override |
|
| 94 |
public String getName() {
|
|
| 95 |
String name = ""; |
|
| 96 |
for (int i = 0; i < selectedTypeNames.length; i++) {
|
|
| 97 |
name += selectedTypeNames[i] + " "; |
|
| 98 |
} |
|
| 99 |
return name; |
|
| 100 |
} |
|
| 101 |
|
|
| 102 |
/* (non-Javadoc) |
|
| 103 |
* @see org.txm.core.results.TXMResult#getSimpleName() |
|
| 104 |
*/ |
|
| 105 |
@Override |
|
| 106 |
public String getSimpleName() {
|
|
| 107 |
// TODO Auto-generated method stub |
|
| 108 |
return this.getName(); |
|
| 109 |
} |
|
| 110 |
|
|
| 111 |
/* (non-Javadoc) |
|
| 112 |
* @see org.txm.core.results.TXMResult#getDetails() |
|
| 113 |
*/ |
|
| 114 |
@Override |
|
| 115 |
public String getDetails() {
|
|
| 116 |
// TODO Auto-generated method stub |
|
| 117 |
return this.getName(); |
|
| 118 |
} |
|
| 119 |
|
|
| 120 |
/* (non-Javadoc) |
|
| 121 |
* @see org.txm.core.results.TXMResult#clean() |
|
| 122 |
*/ |
|
| 123 |
@Override |
|
| 124 |
public void clean() {
|
|
| 125 |
//does nothing |
|
| 126 |
} |
|
| 127 |
|
|
| 128 |
/* (non-Javadoc) |
|
| 129 |
* @see org.txm.core.results.TXMResult#canCompute() |
|
| 130 |
*/ |
|
| 131 |
@Override |
|
| 132 |
public boolean canCompute() throws Exception {
|
|
| 133 |
return this.parent != null; |
|
| 134 |
} |
|
| 135 |
|
|
| 136 |
/* (non-Javadoc) |
|
| 137 |
* @see org.txm.core.results.TXMResult#_compute(boolean) |
|
| 138 |
*/ |
|
| 139 |
@Override |
|
| 140 |
protected boolean _compute(boolean update) throws Exception {
|
|
| 141 |
// TODO Auto-generated method stub |
|
| 142 |
return true; |
|
| 143 |
} |
|
| 144 |
|
|
| 145 |
/* (non-Javadoc) |
|
| 146 |
* @see org.txm.core.results.TXMResult#toTxt(java.io.File, java.lang.String, java.lang.String, java.lang.String) |
|
| 147 |
*/ |
|
| 148 |
@Override |
|
| 149 |
public boolean toTxt(File outfile, String encoding, String colseparator, String txtseparator) throws Exception {
|
|
| 150 |
// TODO Auto-generated method stub |
|
| 151 |
return false; |
|
| 152 |
} |
|
| 153 |
|
|
| 154 |
} |
|
| 0 | 155 | |
| tmp/org.txm.specificities.core/src/org/txm/specificities/core/chartsengine/jfreechart/JFCSpecificitiesBarChartCreator.java (revision 544) | ||
|---|---|---|
| 16 | 16 |
import org.txm.chartsengine.jfreechart.core.renderers.interfaces.IRendererWithItemSelection; |
| 17 | 17 |
import org.txm.chartsengine.jfreechart.core.themes.base.ExtendedNumberAxis; |
| 18 | 18 |
import org.txm.chartsengine.jfreechart.core.themes.base.SymbolAxisBetweenTicks; |
| 19 |
import org.txm.core.preferences.TXMPreferences; |
|
| 20 | 19 |
import org.txm.core.results.TXMResult; |
| 21 | 20 |
import org.txm.specificities.core.functions.Specificities; |
| 21 |
import org.txm.specificities.core.functions.SpecificitiesSelection; |
|
| 22 | 22 |
import org.txm.specificities.core.messages.SpecificitiesCoreMessages; |
| 23 | 23 |
import org.txm.specificities.core.preferences.SpecificitiesPreferences; |
| 24 | 24 |
|
| 25 | 25 |
/** |
| 26 |
* Creates a specificities chart from the specified <code>SpecificitesResult</code> result.
|
|
| 26 |
* Creates a bar chart from the specified <code>SpecificitiesSelection</code> result.
|
|
| 27 | 27 |
* @author sjacquot |
| 28 | 28 |
* |
| 29 | 29 |
*/ |
| 30 | 30 |
public class JFCSpecificitiesBarChartCreator extends JFCChartCreator {
|
| 31 | 31 |
|
| 32 |
public JFCSpecificitiesBarChartCreator() {
|
|
| 33 |
} |
|
| 34 |
|
|
| 35 | 32 |
@Override |
| 36 | 33 |
public JFreeChart createChart(TXMResult result) {
|
| 37 | 34 |
|
| 38 |
Specificities specificitiesResult = (Specificities) result;
|
|
| 35 |
SpecificitiesSelection specificitiesSelection = (SpecificitiesSelection) result;
|
|
| 39 | 36 |
|
| 40 | 37 |
// parameters |
| 41 | 38 |
boolean drawBars = result.getBooleanParameterValue(SpecificitiesPreferences.CHART_DRAW_BARS); |
| ... | ... | |
| 50 | 47 |
|
| 51 | 48 |
if(drawBars) {
|
| 52 | 49 |
// Create the bar chart |
| 53 |
chart = this.getChartsEngine().createXYBarChart(dataset, specificitiesResult.getName(), SpecificitiesCoreMessages.Charts_X_AXIS_LABEL, SpecificitiesCoreMessages.Charts_Y_AXIS_LABEL, true, false);
|
|
| 50 |
chart = this.getChartsEngine().createXYBarChart(dataset, specificitiesSelection.getName(), SpecificitiesCoreMessages.Charts_X_AXIS_LABEL, SpecificitiesCoreMessages.Charts_Y_AXIS_LABEL, true, false);
|
|
| 54 | 51 |
} |
| 55 | 52 |
else {
|
| 56 | 53 |
// Create the line chart |
| 57 |
chart = this.getChartsEngine().createXYLineChart(dataset, specificitiesResult.getName(), SpecificitiesCoreMessages.Charts_X_AXIS_LABEL, SpecificitiesCoreMessages.Charts_Y_AXIS_LABEL,
|
|
| 54 |
chart = this.getChartsEngine().createXYLineChart(dataset, specificitiesSelection.getName(), SpecificitiesCoreMessages.Charts_X_AXIS_LABEL, SpecificitiesCoreMessages.Charts_Y_AXIS_LABEL,
|
|
| 58 | 55 |
true, false, true, true, true, false, false); |
| 59 | 56 |
} |
| 60 | 57 |
|
| ... | ... | |
| 86 | 83 |
@Override |
| 87 | 84 |
public void updateChart(Object chart, TXMResult result) {
|
| 88 | 85 |
|
| 89 |
Specificities specificitiesResult = (Specificities) result;
|
|
| 86 |
SpecificitiesSelection specificitiesSelection = (SpecificitiesSelection) result;
|
|
| 90 | 87 |
JFreeChart jfcChart = (JFreeChart) chart; |
| 91 | 88 |
|
| 92 | 89 |
// freeze rendering |
| ... | ... | |
| 100 | 97 |
|
| 101 | 98 |
// Transpose the data set |
| 102 | 99 |
if(result.getBooleanParameterValue(SpecificitiesPreferences.CHART_TRANSPOSE)) {
|
| 103 |
xAxisSymbols = new String[specificitiesResult.getSelectedTypeNames().length];
|
|
| 100 |
xAxisSymbols = new String[specificitiesSelection.getSelectedTypeNames().length];
|
|
| 104 | 101 |
|
| 105 |
for(int i = 0; i < specificitiesResult.getSelectedPartNames().length; i++) {
|
|
| 106 |
XYSeries series = new XYSeries(specificitiesResult.getSelectedPartNames()[i]);
|
|
| 102 |
for(int i = 0; i < specificitiesSelection.getSelectedPartNames().length; i++) {
|
|
| 103 |
XYSeries series = new XYSeries(specificitiesSelection.getSelectedPartNames()[i]);
|
|
| 107 | 104 |
dataset.addSeries(series); |
| 108 | 105 |
|
| 109 |
for(int j = 0; j < specificitiesResult.getSelectedTypeNames().length; j++) {
|
|
| 110 |
series.add(j, specificitiesResult.getSelectedSpecificitiesIndex()[j][i]);
|
|
| 106 |
for(int j = 0; j < specificitiesSelection.getSelectedTypeNames().length; j++) {
|
|
| 107 |
series.add(j, specificitiesSelection.getSelectedSpecificitiesIndex()[j][i]);
|
|
| 111 | 108 |
// Add X axis symbol |
| 112 |
xAxisSymbols[j] = specificitiesResult.getSelectedTypeNames()[j];
|
|
| 109 |
xAxisSymbols[j] = specificitiesSelection.getSelectedTypeNames()[j];
|
|
| 113 | 110 |
} |
| 114 | 111 |
} |
| 115 | 112 |
|
| 116 | 113 |
} |
| 117 | 114 |
else {
|
| 118 |
xAxisSymbols = new String[specificitiesResult.getSelectedPartNames().length];
|
|
| 115 |
xAxisSymbols = new String[specificitiesSelection.getSelectedPartNames().length];
|
|
| 119 | 116 |
|
| 120 |
for(int i = 0; i < specificitiesResult.getSelectedTypeNames().length; i++) {
|
|
| 117 |
for(int i = 0; i < specificitiesSelection.getSelectedTypeNames().length; i++) {
|
|
| 121 | 118 |
|
| 122 |
XYSeries series = new XYSeries(specificitiesResult.getSelectedTypeNames()[i]);
|
|
| 119 |
XYSeries series = new XYSeries(specificitiesSelection.getSelectedTypeNames()[i]);
|
|
| 123 | 120 |
dataset.addSeries(series); |
| 124 | 121 |
|
| 125 |
for(int j = 0; j < specificitiesResult.getSelectedPartNames().length; j++) {
|
|
| 126 |
series.add(j, specificitiesResult.getSelectedSpecificitiesIndex()[i][j]);
|
|
| 122 |
for(int j = 0; j < specificitiesSelection.getSelectedPartNames().length; j++) {
|
|
| 123 |
series.add(j, specificitiesSelection.getSelectedSpecificitiesIndex()[i][j]);
|
|
| 127 | 124 |
// Add X axis symbol |
| 128 |
xAxisSymbols[j] = specificitiesResult.getSelectedPartNames()[j];
|
|
| 125 |
xAxisSymbols[j] = specificitiesSelection.getSelectedPartNames()[j];
|
|
| 129 | 126 |
} |
| 130 | 127 |
} |
| 131 | 128 |
} |
| ... | ... | |
| 153 | 150 |
|
| 154 | 151 |
@Override |
| 155 | 152 |
public Class getResultDataClass() {
|
| 156 |
return Specificities.class; |
|
| 153 |
return SpecificitiesSelection.class;
|
|
| 157 | 154 |
} |
| 158 | 155 |
|
| 159 | 156 |
|
| tmp/org.txm.specificities.core/src/org/txm/specificities/core/chartsengine/r/RSpecificitiesBarChartCreator.java (revision 544) | ||
|---|---|---|
| 4 | 4 |
|
| 5 | 5 |
import org.txm.chartsengine.core.preferences.ChartsEnginePreferences; |
| 6 | 6 |
import org.txm.chartsengine.r.core.RChartCreator; |
| 7 |
import org.txm.core.preferences.TXMPreferences; |
|
| 8 | 7 |
import org.txm.core.results.TXMResult; |
| 9 |
import org.txm.specificities.core.functions.Specificities; |
|
| 8 |
import org.txm.specificities.core.functions.SpecificitiesSelection;
|
|
| 10 | 9 |
import org.txm.specificities.core.messages.SpecificitiesCoreMessages; |
| 11 | 10 |
import org.txm.specificities.core.preferences.SpecificitiesPreferences; |
| 12 | 11 |
import org.txm.statsengine.core.data.Matrix; |
| ... | ... | |
| 17 | 16 |
import org.txm.utils.logger.Log; |
| 18 | 17 |
|
| 19 | 18 |
/** |
| 20 |
* Creates a partition dimensions bar chart from the specified <code>Partition</code> result.
|
|
| 19 |
* Creates a bar chart from the specified <code>SpecificitiesSelection</code> result.
|
|
| 21 | 20 |
* @author sjacquot |
| 22 | 21 |
* |
| 23 | 22 |
*/ |
| ... | ... | |
| 30 | 29 |
|
| 31 | 30 |
try {
|
| 32 | 31 |
|
| 33 |
Specificities specificitiesResult = (Specificities) result;
|
|
| 32 |
SpecificitiesSelection specificitiesSelection = (SpecificitiesSelection) result;
|
|
| 34 | 33 |
|
| 35 | 34 |
// parameters |
| 36 | 35 |
boolean transpose = result.getBooleanParameterValue(SpecificitiesPreferences.CHART_TRANSPOSE); |
| ... | ... | |
| 46 | 45 |
// TODO: should filter max and min here |
| 47 | 46 |
// specIndex |
| 48 | 47 |
|
| 49 |
Matrix spec = new DoubleMatrix(specificitiesResult.getSelectedSpecificitiesIndex());
|
|
| 50 |
Vector types = new VectorImpl(specificitiesResult.getSelectedTypeNames());
|
|
| 51 |
Vector parts = new VectorImpl(specificitiesResult.getSelectedPartNames());
|
|
| 48 |
Matrix spec = new DoubleMatrix(specificitiesSelection.getSelectedSpecificitiesIndex());
|
|
| 49 |
Vector types = new VectorImpl(specificitiesSelection.getSelectedTypeNames());
|
|
| 50 |
Vector parts = new VectorImpl(specificitiesSelection.getSelectedPartNames());
|
|
| 52 | 51 |
|
| 53 | 52 |
RWorkspace rw = RWorkspace.getRWorkspaceInstance(); |
| 54 | 53 |
rw.eval("rownames(" + spec.getSymbol() + ") <- " + types.getSymbol() + ";"); //$NON-NLS-1$ //$NON-NLS-2$ //$NON-NLS-3$
|
| ... | ... | |
| 73 | 72 |
// Title |
| 74 | 73 |
String title = ""; |
| 75 | 74 |
if(result.getBooleanParameterValue(ChartsEnginePreferences.SHOW_TITLE)) {
|
| 76 |
title = specificitiesResult.getName();
|
|
| 75 |
title = specificitiesSelection.getName();
|
|
| 77 | 76 |
} |
| 78 | 77 |
|
| 79 | 78 |
|
| ... | ... | |
| 81 | 80 |
int itemsCount = 0; |
| 82 | 81 |
// to put one color per part |
| 83 | 82 |
if (transpose) {
|
| 84 |
itemsCount = specificitiesResult.getSelectedPartNames().length;
|
|
| 83 |
itemsCount = specificitiesSelection.getSelectedPartNames().length;
|
|
| 85 | 84 |
} |
| 86 | 85 |
// to put one color per word |
| 87 | 86 |
else {
|
| 88 |
itemsCount = specificitiesResult.getSelectedTypeNames().length;
|
|
| 87 |
itemsCount = specificitiesSelection.getSelectedTypeNames().length;
|
|
| 89 | 88 |
} |
| 90 | 89 |
|
| 91 | 90 |
String[] colors = new String[itemsCount]; |
| ... | ... | |
| 175 | 174 |
|
| 176 | 175 |
@Override |
| 177 | 176 |
public Class getResultDataClass() {
|
| 178 |
return Specificities.class; |
|
| 177 |
return SpecificitiesSelection.class;
|
|
| 179 | 178 |
} |
| 180 | 179 |
|
| 181 | 180 |
} |
| tmp/org.txm.specificities.core/src/org/txm/functions/contrasts/Chi2.java (revision 544) | ||
|---|---|---|
| 15 | 15 |
} |
| 16 | 16 |
|
| 17 | 17 |
@Override |
| 18 |
public boolean setParameters(TXMParameters parameters) {
|
|
| 19 |
return false; |
|
| 20 |
} |
|
| 21 |
|
|
| 22 |
@Override |
|
| 23 | 18 |
protected boolean _compute(boolean update) throws StatException {
|
| 24 | 19 |
itable = table.getData(); |
| 25 | 20 |
colNames = itable.getColNames().asStringsArray(); |
| tmp/org.txm.specificities.core/src/org/txm/functions/contrasts/Specificites2.java (revision 544) | ||
|---|---|---|
| 54 | 54 |
return itable != null; |
| 55 | 55 |
} |
| 56 | 56 |
|
| 57 |
@Override |
|
| 58 |
public boolean setParameters(TXMParameters parameters) {
|
|
| 59 |
return false; |
|
| 60 |
} |
|
| 61 | 57 |
} |
| tmp/org.txm.specificities.core/src/org/txm/functions/contrasts/RelativeFrequency.java (revision 544) | ||
|---|---|---|
| 63 | 63 |
return itable != null; |
| 64 | 64 |
} |
| 65 | 65 |
|
| 66 |
@Override |
|
| 67 |
public boolean setParameters(TXMParameters parameters) {
|
|
| 68 |
return false; |
|
| 69 |
} |
|
| 70 | 66 |
} |
| tmp/org.txm.lexicaltable.rcp/src/org/txm/lexicaltable/rcp/handlers/ComputeLexicalTable.java (revision 544) | ||
|---|---|---|
| 180 | 180 |
|
| 181 | 181 |
monitor.worked(45); |
| 182 | 182 |
|
| 183 |
lexicalTableAble.getParent().addResult(table);
|
|
| 183 |
lexicalTableAble.getParent().addChild(table);
|
|
| 184 | 184 |
|
| 185 | 185 |
monitor.worked(5); |
| 186 | 186 |
|
| ... | ... | |
| 275 | 275 |
return Status.CANCEL_STATUS; |
| 276 | 276 |
} |
| 277 | 277 |
|
| 278 |
partition.addResult(table);
|
|
| 278 |
partition.addChild(table);
|
|
| 279 | 279 |
|
| 280 | 280 |
monitor.worked(5); |
| 281 | 281 |
|
| ... | ... | |
| 475 | 475 |
if (monitor.isCanceled() || table == null) |
| 476 | 476 |
return Status.CANCEL_STATUS; |
| 477 | 477 |
|
| 478 |
firstIndex.addResult(table);
|
|
| 478 |
firstIndex.addChild(table);
|
|
| 479 | 479 |
monitor.worked(5); |
| 480 | 480 |
|
| 481 | 481 |
monitor.subTask(RCPMessages.ComputeLexicalTable_10); |
| tmp/org.txm.groovy.core/src/groovy/org/txm/test/CQPBenchmark.groovy (revision 544) | ||
|---|---|---|
| 288 | 288 |
CA ca = new CA(discours_dates, word_property, 0 ,9999999) |
| 289 | 289 |
ca.stepLexicalTable(); |
| 290 | 290 |
ca.stepSortTableLexical(); |
| 291 |
ca.stepCompute()
|
|
| 291 |
ca.compute()
|
|
| 292 | 292 |
ca.toSVGFactorialMap(new File(exporttestdir,"cadates"), true, true) |
| 293 | 293 |
ca.toSVGSingularValues(new File(exporttestdir,"cadates_singularvalues")) |
| 294 | 294 |
if (firstExecution == 0) |
| ... | ... | |
| 300 | 300 |
print " AFC" |
| 301 | 301 |
time = System.currentTimeMillis(); |
| 302 | 302 |
CA ca2 = new CA(table); |
| 303 |
ca2.stepCompute()
|
|
| 303 |
ca2.compute()
|
|
| 304 | 304 |
ca2.toSVGFactorialMap(new File(exporttestdir,"cadates"), true, true) |
| 305 | 305 |
ca2.toSVGSingularValues(new File(exporttestdir,"cadates_singularvalues")) |
| 306 | 306 |
if (firstExecution == 0) |
| tmp/org.txm.lexicaltable.core/src/org/txm/lexicaltable/core/statsengine/r/data/LexicalTableImpl.java (revision 544) | ||
|---|---|---|
| 126 | 126 |
* @param symbol the symbol |
| 127 | 127 |
* @throws RWorkspaceException the r workspace exception |
| 128 | 128 |
*/ |
| 129 |
public LexicalTableImpl(LexicalTableImpl table, String symbol) |
|
| 130 |
throws RWorkspaceException {
|
|
| 129 |
public LexicalTableImpl(LexicalTableImpl table, String symbol) throws RWorkspaceException {
|
|
| 131 | 130 |
super(symbol); |
| 132 | 131 |
initSortedIndex(); |
| 133 | 132 |
} |
| ... | ... | |
| 140 | 139 |
* @param symbol the symbol |
| 141 | 140 |
* @throws RWorkspaceException the r workspace exception |
| 142 | 141 |
*/ |
| 143 |
public LexicalTableImpl(String symbol) |
|
| 144 |
throws RWorkspaceException {
|
|
| 142 |
public LexicalTableImpl(String symbol) throws RWorkspaceException {
|
|
| 145 | 143 |
super(symbol); |
| 146 | 144 |
} |
| 147 | 145 |
|
| 146 |
/** |
|
| 147 |
* |
|
| 148 |
* @param symbol |
|
| 149 |
* @param corpusLexicon |
|
| 150 |
* @param subcorpusLexicon |
|
| 151 |
* @throws StatException |
|
| 152 |
*/ |
|
| 148 | 153 |
public LexicalTableImpl(String symbol, Lexicon corpusLexicon, Lexicon subcorpusLexicon) throws StatException {
|
| 149 | 154 |
super(symbol); |
| 150 | 155 |
RWorkspace rw = RWorkspace.getRWorkspaceInstance(); |
| ... | ... | |
| 190 | 195 |
BufferedReader reader = new BufferedReader(new FileReader(f)); |
| 191 | 196 |
int i = 0; |
| 192 | 197 |
|
| 193 |
while(reader.readLine() != null) i++; |
|
| 198 |
while(reader.readLine() != null) {
|
|
| 199 |
i++; |
|
| 200 |
} |
|
| 194 | 201 |
return i; |
| 195 | 202 |
} catch (Exception e) { return 0; }
|
| 196 | 203 |
} |
| tmp/org.txm.lexicaltable.core/src/org/txm/lexicaltable/core/functions/LexicalTableFactory.java (revision 544) | ||
|---|---|---|
| 5 | 5 |
import java.util.List; |
| 6 | 6 |
import java.util.Map; |
| 7 | 7 |
|
| 8 |
import org.txm.core.results.TXMResult; |
|
| 9 |
import org.txm.lexicaltable.core.statsengine.data.ILexicalTable; |
|
| 10 | 8 |
import org.txm.lexicaltable.core.statsengine.r.data.LexicalTableImpl; |
| 11 | 9 |
import org.txm.lexicon.core.corpusengine.cqp.Lexicon; |
| 12 | 10 |
import org.txm.searchengine.cqp.clientExceptions.CqiClientException; |
| ... | ... | |
| 14 | 12 |
import org.txm.searchengine.cqp.corpus.Partition; |
| 15 | 13 |
import org.txm.searchengine.cqp.corpus.Property; |
| 16 | 14 |
import org.txm.searchengine.cqp.corpus.Subcorpus; |
| 17 |
import org.txm.statsengine.core.StatException; |
|
| 18 |
import org.txm.statsengine.core.data.Vector; |
|
| 19 | 15 |
import org.txm.statsengine.r.core.exceptions.RWorkspaceException; |
| 20 | 16 |
|
| 21 | 17 |
public class LexicalTableFactory {
|
| ... | ... | |
| 25 | 21 |
* |
| 26 | 22 |
* @param partition the partition |
| 27 | 23 |
* @param analysisProperty the analysis property |
| 28 |
* @param Fmin the fmin
|
|
| 24 |
* @param fMin the fmin
|
|
| 29 | 25 |
* @param vmax |
| 30 | 26 |
* @return the lexical table |
| 31 | 27 |
* @throws CqiClientException the cqi client exception |
| 32 | 28 |
* @throws RWorkspaceException the r workspace exception |
| 33 | 29 |
*/ |
| 34 |
public static final LexicalTable getLexicalTable(Partition partition, |
|
| 35 |
Property analysisProperty, int Fmin) throws Exception {
|
|
| 30 |
public static final LexicalTable getLexicalTable(Partition partition, Property analysisProperty, int fMin) throws Exception {
|
|
| 36 | 31 |
//long time = System.currentTimeMillis(); |
| 37 | 32 |
List<Lexicon> lexicons = new ArrayList<Lexicon>(); |
| 38 | 33 |
// Set<String> allLexiconEntry = new HashSet<String>(); |
| ... | ... | |
| 49 | 44 |
ArrayList<String> filteredForms = new ArrayList<String>(); |
| 50 | 45 |
//create a copy and filter line with Fmin; |
| 51 | 46 |
for (int i = 0 ; i < ll.getFreq().length ; i++) {
|
| 52 |
if (ll.getFreq()[i] >= Fmin) {
|
|
| 47 |
if (ll.getFreq()[i] >= fMin) {
|
|
| 53 | 48 |
filteredForms.add(ll.getForms()[i]); |
| 54 | 49 |
} |
| 55 | 50 |
} |
| ... | ... | |
| 73 | 68 |
for (int j = 0; j < freqs.length; j++) {
|
| 74 | 69 |
id = entries2index.get(ents[j]); |
| 75 | 70 |
// if (entriesFreqs[id] >= 2) |
| 76 |
if (id != null) |
|
| 71 |
if (id != null) {
|
|
| 77 | 72 |
mat[id][i] = freqs[j]; //mat.setQuick(id, i, freqs[j]); |
| 73 |
} |
|
| 78 | 74 |
} |
| 79 | 75 |
} |
| 80 | 76 |
//System.out.println("time build matrix "+(System.currentTimeMillis()-time));
|
| ... | ... | |
| 83 | 79 |
//System.out.println("mat size " + mat.rows());
|
| 84 | 80 |
//System.out.println("mat columns " + mat.columns());
|
| 85 | 81 |
|
| 86 |
LexicalTableImpl itable = new LexicalTableImpl(mat, filteredForms.toArray(new String[]{}), partition.getPartShortNames()
|
|
| 87 |
.toArray(new String[] {}));
|
|
| 82 |
LexicalTableImpl iTable = new LexicalTableImpl(mat, filteredForms.toArray(new String[]{}), partition.getPartShortNames().toArray(new String[] {}));
|
|
| 88 | 83 |
|
| 89 |
LexicalTable table = new LexicalTable(partition, |
|
| 90 |
analysisProperty, Fmin, itable); |
|
| 84 |
LexicalTable table = new LexicalTable(partition, analysisProperty, fMin, iTable); |
|
| 91 | 85 |
//System.out.println("time build table lexical "+(System.currentTimeMillis()-time));
|
| 92 | 86 |
return table; |
| 93 | 87 |
} |
| 94 | 88 |
|
| 89 |
/** |
|
| 90 |
* |
|
| 91 |
* @param subcorpus |
|
| 92 |
* @param property |
|
| 93 |
* @return |
|
| 94 |
* @throws Exception |
|
| 95 |
*/ |
|
| 95 | 96 |
public static LexicalTable getLexicalTable(Subcorpus subcorpus, Property property) throws Exception {
|
| 96 |
LexicalTable table = new LexicalTable(subcorpus, property); |
|
| 97 |
return table; |
|
| 97 |
return new LexicalTable(subcorpus, property); |
|
| 98 | 98 |
} |
| 99 | 99 |
} |
| tmp/org.txm.lexicaltable.core/src/org/txm/lexicaltable/core/functions/LexicalTable.java (revision 544) | ||
|---|---|---|
| 8 | 8 |
import java.util.List; |
| 9 | 9 |
import java.util.Map; |
| 10 | 10 |
|
| 11 |
import org.txm.core.results.TXMParameters; |
|
| 12 | 11 |
import org.txm.core.results.TXMResult; |
| 13 | 12 |
import org.txm.index.core.functions.Index; |
| 14 | 13 |
import org.txm.index.core.functions.Line; |
| 15 | 14 |
import org.txm.lexicaltable.core.messages.LexicalTableCoreMessages; |
| 16 |
import org.txm.lexicaltable.core.preferences.LexicalTablePreferences; |
|
| 17 | 15 |
import org.txm.lexicaltable.core.statsengine.data.ILexicalTable; |
| 18 | 16 |
import org.txm.lexicaltable.core.statsengine.r.data.LexicalTableImpl; |
| 19 | 17 |
import org.txm.lexicon.core.corpusengine.cqp.Lexicon; |
| ... | ... | |
| 26 | 24 |
import org.txm.statsengine.core.data.Vector; |
| 27 | 25 |
import org.txm.statsengine.r.core.RWorkspace; |
| 28 | 26 |
import org.txm.statsengine.r.core.exceptions.RWorkspaceException; |
| 29 |
import org.txm.utils.logger.Log; |
|
| 30 | 27 |
|
| 31 | 28 |
/** |
| 32 | 29 |
* ILexicalTable logic + TXMResult management methods |
| ... | ... | |
| 37 | 34 |
public class LexicalTable extends TXMResult {
|
| 38 | 35 |
|
| 39 | 36 |
public static Integer LEXICALTABLE_COUNTER = new Integer(1); |
| 40 |
public static String SYMBOL_BASE = "LexicalTable_"; |
|
| 37 |
public static String SYMBOL_BASE = "LexicalTable_"; //$NON-NLS-1$
|
|
| 41 | 38 |
|
| 42 | 39 |
/** the statengine data object */ |
| 43 | 40 |
ILexicalTable data; |
| ... | ... | |
| 76 | 73 |
} |
| 77 | 74 |
|
| 78 | 75 |
/** |
| 76 |
* |
|
| 77 |
* @param partition |
|
| 78 |
* @param analysisProperty |
|
| 79 |
* @param fmin |
|
| 80 |
* @param itable |
|
| 81 |
*/ |
|
| 82 |
public LexicalTable(Partition partition, Property analysisProperty, int fmin, LexicalTableImpl itable) {
|
|
| 83 |
super(partition); |
|
| 84 |
this.pProperty = analysisProperty; |
|
| 85 |
this.data = itable; |
|
| 86 |
} |
|
| 87 |
|
|
| 88 |
public LexicalTable(Subcorpus subcorpus) throws Exception {
|
|
| 89 |
this(subcorpus, subcorpus.getProperty("word")); //$NON-NLS-1$
|
|
| 90 |
} |
|
| 91 |
|
|
| 92 |
public LexicalTable(Subcorpus subcorpus, Property property) throws Exception {
|
|
| 93 |
super(subcorpus); |
|
| 94 |
this.pProperty = property; |
|
| 95 |
} |
|
| 96 |
|
|
| 97 |
/** |
|
| 79 | 98 |
* Creates the lexical table. |
| 80 | 99 |
* |
| 81 | 100 |
* @param vocabularies the vocabularies |
| ... | ... | |
| 84 | 103 |
* @return the lexical table |
| 85 | 104 |
* @throws RWorkspaceException the r workspace exception |
| 86 | 105 |
*/ |
| 87 |
protected void _computeForIndex(List<Index> vocabularies) |
|
| 88 |
throws RWorkspaceException {
|
|
| 106 |
protected void _computeForIndex(List<Index> vocabularies) throws RWorkspaceException {
|
|
| 89 | 107 |
System.out.println(LexicalTableCoreMessages.LexicalTableImpl_1 + vocabularies); |
| 90 | 108 |
Index partindex = vocabularies.get(0);// FRIGO |
| 91 | 109 |
Partition partition = partindex.getPartition(); // the Index is computed on a partition |
| 92 | 110 |
|
| 93 |
if (!partindex.isComputedWithPartition()) |
|
| 111 |
if (!partindex.isComputedWithPartition()) {
|
|
| 94 | 112 |
throw new IllegalArgumentException("Vocabularies are not computed with a partition. Aborting.");
|
| 113 |
} |
|
| 95 | 114 |
|
| 96 | 115 |
this.pProperty = partindex.getProperties().get(0); |
| 97 | 116 |
|
| ... | ... | |
| 103 | 122 |
Line ll = alllines.get(l.getSignature()); |
| 104 | 123 |
int[] c1 = ll.getFrequencies(); |
| 105 | 124 |
int[] c2 = l.getFrequencies(); |
| 106 |
for (int i = 0; i < c1.length; i++) |
|
| 125 |
for (int i = 0; i < c1.length; i++) {
|
|
| 107 | 126 |
c2[i] += c1[i]; |
| 127 |
} |
|
| 108 | 128 |
ll.setCounts(c2, 0.0f); |
| 109 |
} else |
|
| 129 |
} |
|
| 130 |
else {
|
|
| 110 | 131 |
alllines.put(l.toString(), l); |
| 132 |
} |
|
| 111 | 133 |
} |
| 112 | 134 |
} |
| 113 | 135 |
|
| ... | ... | |
| 119 | 141 |
rownames.add(l.toString()); |
| 120 | 142 |
} |
| 121 | 143 |
int extra = 0; |
| 122 |
if (pUseAllOccurrences) |
|
| 144 |
if (pUseAllOccurrences) {
|
|
| 123 | 145 |
extra = 1; |
| 146 |
} |
|
| 124 | 147 |
|
| 125 | 148 |
String[] entries = new String[alllines.size() + extra]; |
| 126 | 149 |
|
| ... | ... | |
| 163 | 186 |
//System.out.println("mat size : ["+(rownames.size() + extra)+"]["+colnames.size()+"]");
|
| 164 | 187 |
//System.out.println("rownames size : "+rownames.size());
|
| 165 | 188 |
//System.out.println("colnames size : "+colnames.size());
|
| 166 |
this.data = new LexicalTableImpl(mat, rownames.toArray(new String[] {}), colnames
|
|
| 167 |
.toArray(new String[] {}));
|
|
| 189 |
this.data = new LexicalTableImpl(mat, rownames.toArray(new String[] {}), colnames.toArray(new String[] {}));
|
|
| 168 | 190 |
} |
| 169 | 191 |
|
| 170 |
/** |
|
| 171 |
* |
|
| 172 |
* @param partition |
|
| 173 |
* @param analysisProperty |
|
| 174 |
* @param fmin |
|
| 175 |
* @param itable |
|
| 176 |
*/ |
|
| 177 |
public LexicalTable(Partition partition, Property analysisProperty, int fmin, LexicalTableImpl itable) {
|
|
| 178 |
super(partition); |
|
| 179 |
this.pProperty = analysisProperty; |
|
| 180 |
this.data = itable; |
|
| 181 |
} |
|
| 182 | 192 |
|
| 183 |
public LexicalTable(Subcorpus subcorpus) throws Exception {
|
|
| 184 |
this(subcorpus, subcorpus.getProperty("word"));
|
|
| 185 |
} |
|
| 186 |
|
|
| 187 |
public LexicalTable(Subcorpus subcorpus, Property property) throws Exception {
|
|
| 188 |
super(subcorpus); |
|
| 189 |
this.pProperty = property; |
|
| 190 |
} |
|
| 191 |
|
|
| 192 | 193 |
@Override |
| 193 | 194 |
protected boolean _compute(boolean update) throws Exception {
|
| 194 | 195 |
|
| ... | ... | |
| 204 | 205 |
return false; |
| 205 | 206 |
} |
| 206 | 207 |
|
| 208 |
/** |
|
| 209 |
* |
|
| 210 |
* @param partition |
|
| 211 |
* @throws Exception |
|
| 212 |
*/ |
|
| 207 | 213 |
protected void _computeForPartition(Partition partition) throws Exception {
|
| 208 | 214 |
//long time = System.currentTimeMillis(); |
| 209 | 215 |
List<Lexicon> lexicons = new ArrayList<Lexicon>(); |
| ... | ... | |
| 245 | 251 |
for (int j = 0; j < freqs.length; j++) {
|
| 246 | 252 |
id = entries2index.get(ents[j]); |
| 247 | 253 |
// if (entriesFreqs[id] >= 2) |
| 248 |
if (id != null) |
|
| 254 |
if (id != null) {
|
|
| 249 | 255 |
mat[id][i] = freqs[j]; //mat.setQuick(id, i, freqs[j]); |
| 256 |
} |
|
| 250 | 257 |
} |
| 251 | 258 |
} |
| 252 | 259 |
//System.out.println("time build matrix "+(System.currentTimeMillis()-time));
|
| ... | ... | |
| 255 | 262 |
//System.out.println("mat size " + mat.rows());
|
| 256 | 263 |
//System.out.println("mat columns " + mat.columns());
|
| 257 | 264 |
|
| 258 |
data = new LexicalTableImpl(mat, filteredForms.toArray(new String[]{}), partition.getPartShortNames()
|
|
| 259 |
.toArray(new String[] {}));
|
|
| 265 |
data = new LexicalTableImpl(mat, filteredForms.toArray(new String[]{}), partition.getPartShortNames().toArray(new String[] {}));
|
|
| 260 | 266 |
|
| 261 | 267 |
} |
| 262 | 268 |
|
| 263 | 269 |
@Override |
| 264 | 270 |
public boolean canCompute() {
|
| 265 |
return true; // can be computed on partition or corpus
|
|
| 271 |
return this.parent != null; // can be computed on partition or corpus
|
|
| 266 | 272 |
} |
| 267 | 273 |
|
| 268 | 274 |
@Override |
| ... | ... | |
| 293 | 299 |
if (parent instanceof Partition) return ((Partition)parent).getCorpus(); |
| 294 | 300 |
if (parent instanceof Index) return ((Index)parent).getCorpus(); |
| 295 | 301 |
else return null; |
| 302 |
// FIXME: prove this above method, it should work, but.... |
|
| 303 |
//return this.getFirstCorpusParent(); |
|
| 296 | 304 |
} |
| 297 | 305 |
|
| 298 | 306 |
public ILexicalTable getData() {
|
| ... | ... | |
| 310 | 318 |
|
| 311 | 319 |
@Override |
| 312 | 320 |
public String getName() {
|
| 313 |
return this.getPartition().getSimpleName() + ":" + this.getSimpleName(); //$NON-NLS-1$ |
|
| 321 |
try {
|
|
| 322 |
return this.getPartition().getSimpleName() + ":" + this.getSimpleName(); //$NON-NLS-1$ |
|
| 323 |
} |
|
| 324 |
catch(Exception e) {
|
|
| 325 |
} |
|
| 326 |
return ""; |
|
| 314 | 327 |
} |
| 315 | 328 |
|
| 316 | 329 |
public int getNColumns() {
|
| ... | ... | |
| 374 | 387 |
/** |
| 375 | 388 |
* see LexicalTablePreferences.PROPERTY, LexicalTablePreferences.F_MIN, LexicalTablePreferences.V_MAX and LexicalTablePreferences.USEALLOCCURENCES |
| 376 | 389 |
*/ |
| 377 |
@Override |
|
| 378 |
public boolean setParameters(TXMParameters parameters) {
|
|
| 379 |
try {
|
|
| 380 |
if (parameters.get(LexicalTablePreferences.PROPERTY) != null) {
|
|
| 381 |
Object o = parameters.get(LexicalTablePreferences.PROPERTY); |
|
| 382 |
if (o instanceof Property) this.pProperty = (Property) o; |
|
| 383 |
else if (o instanceof String) this.pProperty = this.getCorpus().getProperty(o.toString()); |
|
| 384 |
} |
|
| 385 |
if (parameters.get(LexicalTablePreferences.F_MIN) != null) {
|
|
| 386 |
Object o = parameters.get(LexicalTablePreferences.F_MIN); |
|
| 387 |
if (o instanceof Integer) this.pFminFilter = (Integer)o; |
|
| 388 |
else if (o instanceof String) this.pFminFilter = Integer.parseInt(o.toString()); |
|
| 389 |
} |
|
| 390 |
if (parameters.get(LexicalTablePreferences.V_MAX) != null) {
|
|
| 391 |
Object o = parameters.get(LexicalTablePreferences.V_MAX); |
|
| 392 |
if (o instanceof Integer) this.pVMaxFilter = (Integer)o; |
|
| 393 |
else if (o instanceof String) this.pVMaxFilter = Integer.parseInt(o.toString()); |
|
| 394 |
} |
|
| 395 |
if (parameters.get(LexicalTablePreferences.USEALLOCCURENCES) != null) {
|
|
| 396 |
Object o = parameters.get(LexicalTablePreferences.USEALLOCCURENCES); |
|
| 397 |
if (o instanceof Boolean) this.pUseAllOccurrences = (Boolean)o; |
|
| 398 |
else if (o instanceof Integer) this.pUseAllOccurrences = (Integer)o > 0; |
|
| 399 |
else if (o instanceof String) this.pUseAllOccurrences = Boolean.parseBoolean(o.toString()); |
|
| 400 |
} |
|
| 390 |
// public boolean setParameters(TXMParameters parameters) {
|
|
| 391 |
// try {
|
|
| 392 |
// if (parameters.get(LexicalTablePreferences.PROPERTY) != null) {
|
|
| 393 |
// Object o = parameters.get(LexicalTablePreferences.PROPERTY); |
|
| 394 |
// if (o instanceof Property) this.pProperty = (Property) o; |
|
| 395 |
// else if (o instanceof String) this.pProperty = this.getCorpus().getProperty(o.toString()); |
|
| 396 |
// } |
|
| 397 |
// if (parameters.get(LexicalTablePreferences.F_MIN) != null) {
|
|
| 398 |
// Object o = parameters.get(LexicalTablePreferences.F_MIN); |
|
| 399 |
// if (o instanceof Integer) this.pFminFilter = (Integer)o; |
|
| 400 |
// else if (o instanceof String) this.pFminFilter = Integer.parseInt(o.toString()); |
|
| 401 |
// } |
|
| 402 |
// if (parameters.get(LexicalTablePreferences.V_MAX) != null) {
|
|
| 403 |
// Object o = parameters.get(LexicalTablePreferences.V_MAX); |
|
| 404 |
// if (o instanceof Integer) this.pVMaxFilter = (Integer)o; |
|
| 405 |
// else if (o instanceof String) this.pVMaxFilter = Integer.parseInt(o.toString()); |
|
| 406 |
// } |
|
| 407 |
// if (parameters.get(LexicalTablePreferences.USEALLOCCURENCES) != null) {
|
|
| 408 |
// Object o = parameters.get(LexicalTablePreferences.USEALLOCCURENCES); |
|
| 409 |
// if (o instanceof Boolean) this.pUseAllOccurrences = (Boolean)o; |
|
| 410 |
// else if (o instanceof Integer) this.pUseAllOccurrences = (Integer)o > 0; |
|
| 411 |
// else if (o instanceof String) this.pUseAllOccurrences = Boolean.parseBoolean(o.toString()); |
|
| 412 |
// } |
|
| 413 |
// |
|
| 414 |
// dirty = true; |
|
| 415 |
// } catch (Exception e) {
|
|
| 416 |
// System.out.println("Error while setting LexicalTable parameters: "+e.getLocalizedMessage());
|
|
| 417 |
// Log.printStackTrace(e); |
|
| 418 |
// return false; |
|
| 419 |
// } |
|
| 420 |
// return true; |
|
| 421 |
// } |
|
| 401 | 422 |
|
| 402 |
dirty = true; |
|
| 403 |
} catch (Exception e) {
|
|
| 404 |
System.out.println("Error while setting LexicalTable parameters: "+e.getLocalizedMessage());
|
|
| 405 |
Log.printStackTrace(e); |
|
| 406 |
return false; |
|
| 407 |
} |
|
| 408 |
return true; |
|
| 409 |
} |
|
| 410 |
|
|
| 411 | 423 |
public boolean toTxt(File outfile, String encoding, String colseparator, String txtseparator) {
|
| 412 | 424 |
return data.toTxt(outfile, encoding, colseparator, txtseparator); |
| 413 | 425 |
} |
| tmp/org.txm.cah.core/src/org/txm/cah/core/functions/AHC.java (revision 544) | ||
|---|---|---|
| 133 | 133 |
dirty = true; |
| 134 | 134 |
} |
| 135 | 135 |
|
| 136 |
@Override |
|
| 137 |
public boolean setParameters(TXMParameters parameters) {
|
|
| 138 |
try {
|
|
| 139 |
Boolean columns = this.getBooleanParameterValue(AHCPreferences.COLUMNS_COMPUTING); |
|
| 140 |
String metric = this.getStringParameterValue(AHCPreferences.METRIC); |
|
| 141 |
Integer nCluster = this.getIntParameterValue(AHCPreferences.N_CLUSTERS); |
|
| 142 |
String method = this.getStringParameterValue(AHCPreferences.METHOD); |
|
| 143 |
this.setParameters(columns, metric, nCluster, method); |
|
| 144 |
} catch(Exception e) {
|
|
| 145 |
System.out.println("Error while setting CAH parameters: "+e.getLocalizedMessage());
|
|
| 146 |
return false; |
|
| 147 |
} |
|
| 148 |
return true; |
|
| 136 |
|
|
| 137 |
public void loadParameters() {
|
|
| 138 |
this.setParameters( |
|
| 139 |
this.getBooleanParameterValue(AHCPreferences.COLUMNS_COMPUTING), |
|
| 140 |
this.getStringParameterValue(AHCPreferences.METRIC), |
|
| 141 |
this.getIntParameterValue(AHCPreferences.N_CLUSTERS), |
|
| 142 |
this.getStringParameterValue(AHCPreferences.METHOD) |
|
| 143 |
); |
|
| 149 | 144 |
} |
| 150 | 145 |
|
| 151 |
// @Override |
|
| 152 |
// public void loadParameters() {
|
|
| 153 |
// this.setParameters( |
|
| 154 |
// this.getBooleanParameterValue(AHCPreferences.COLUMNS_COMPUTING), |
|
| 155 |
// this.getStringParameterValue(AHCPreferences.METRIC), |
|
| 156 |
// this.getIntParameterValue(AHCPreferences.N_CLUSTERS), |
|
| 157 |
// this.getStringParameterValue(AHCPreferences.METHOD) |
|
| 158 |
// ); |
|
| 159 |
// } |
|
| 160 |
|
|
| 161 | 146 |
|
| 162 | 147 |
@Override |
| 163 | 148 |
public boolean canCompute() {
|
| ... | ... | |
| 217 | 202 |
@Override |
| 218 | 203 |
protected boolean _compute(boolean update) {
|
| 219 | 204 |
|
| 205 |
this.loadParameters(); |
|
| 206 |
|
|
| 220 | 207 |
Log.info("Computing CAH...");
|
| 221 | 208 |
try {
|
| 222 | 209 |
RWorkspace rw = RWorkspace.getRWorkspaceInstance(); |
| tmp/org.txm.progression.rcp/src/org/txm/progression/rcp/forms/ProgressionParametersComposite.java (revision 544) | ||
|---|---|---|
| 1 |
package org.txm.progression.rcp.forms; |
|
| 2 |
import org.eclipse.swt.SWT; |
|
| 3 |
import org.eclipse.swt.custom.SashForm; |
|
| 4 |
import org.eclipse.swt.custom.ScrolledComposite; |
|
| 5 |
import org.eclipse.swt.layout.FillLayout; |
|
| 6 |
import org.eclipse.swt.layout.GridData; |
|
| 7 |
import org.eclipse.swt.layout.GridLayout; |
|
| 8 |
import org.eclipse.swt.widgets.Button; |
|
| 9 |
import org.eclipse.swt.widgets.Combo; |
|
| 10 |
import org.eclipse.swt.widgets.Composite; |
|
| 11 |
import org.eclipse.swt.widgets.Label; |
|
| 12 |
import org.eclipse.swt.widgets.Table; |
|
| 13 |
import org.eclipse.swt.widgets.Text; |
|
| 14 |
import org.txm.rcp.RCPMessages; |
|
| 15 |
|
|
| 16 |
|
|
| 17 |
public class ProgressionParametersComposite extends Composite {
|
|
| 18 |
SashForm sashForm; |
|
| 19 |
|
|
| 20 |
private Table table; |
|
| 21 |
private Text scaleTextEdit; |
|
| 22 |
private Text regTextEdit; |
|
| 23 |
|
|
| 24 |
Button btnSupprimer; |
|
| 25 |
Button cumulBtn; |
|
| 26 |
Button densiBtn; |
|
| 27 |
|
|
| 28 |
Combo structCombo; |
|
| 29 |
Combo propCombo; |
|
| 30 |
private Button styleRadio; |
|
| 31 |
private Button repeatRadio; |
|
| 32 |
private Button NBRadio; |
|
| 33 |
private Button btnNewButton; |
|
| 34 |
|
|
| 35 |
|
|
| 36 |
/** |
|
| 37 |
* Creates the composite. |
|
| 38 |
* @param parent |
|
| 39 |
* @param style |
|
| 40 |
*/ |
|
| 41 |
public ProgressionParametersComposite(Composite parent, int style) {
|
|
| 42 |
super(parent, style); |
|
| 43 |
|
|
| 44 |
|
|
| 45 |
//parent.setLayout(new GridLayout(1, true)); |
|
| 46 |
|
|
| 47 |
// ExpandBar bar = new ExpandBar(parent, SWT.NONE); |
|
| 48 |
|
|
| 49 |
// sashForm = new SashForm(parent, SWT.VERTICAL); |
|
| 50 |
// sashForm.setLayoutData(new GridData(GridData.FILL, GridData.FILL, true, true)); |
|
| 51 |
|
|
| 52 |
|
|
| 53 |
|
|
| 54 |
ScrolledComposite scrolledComposite_1 = new ScrolledComposite(parent, SWT.BORDER | SWT.H_SCROLL | SWT.V_SCROLL); |
|
| 55 |
scrolledComposite_1.setExpandHorizontal(true); |
|
| 56 |
scrolledComposite_1.setExpandVertical(true); |
|
| 57 |
|
|
| 58 |
// Composite scrolledComposite_1 = new Composite(this, SWT.BORDER); |
|
| 59 |
|
|
| 60 |
Composite composite_1 = new Composite(scrolledComposite_1, SWT.NONE); |
|
| 61 |
composite_1.setLayout(new FillLayout(SWT.VERTICAL)); |
|
| 62 |
|
|
| 63 |
Composite composite = new Composite(composite_1, SWT.NONE); |
|
| 64 |
composite.setLayout(new GridLayout(5, false)); |
|
| 65 |
|
|
| 66 |
Label label = new Label(composite, SWT.NONE); |
|
| 67 |
GridData gd_label = new GridData(SWT.LEFT, SWT.CENTER, false, false, 1, 1); |
|
| 68 |
gd_label.widthHint = 29; |
|
| 69 |
label.setLayoutData(gd_label); |
|
| 70 |
label.setText(RCPMessages.ProgressionForm_0); |
|
| 71 |
|
|
| 72 |
cumulBtn = new Button(composite, SWT.RADIO); |
|
| 73 |
cumulBtn.setText(RCPMessages.ProgressionForm_1); |
|
| 74 |
cumulBtn.setSelection(true); |
|
Formats disponibles : Unified diff