Révision 403
| tmp/org.txm.specificities.rcp/src/org/txm/specificities/rcp/editors/SpecificitiesTableLabelProvider.java (revision 403) | ||
|---|---|---|
| 58 | 58 |
public SpecificitiesTableLabelProvider() {
|
| 59 | 59 |
//this.partindexes = partindexes; |
| 60 | 60 |
//showPValues = "true".equals(Toolbox.getParam(SpecificitiesPreferencePage.SPECIF_PVALUES)); //$NON-NLS-1$ |
| 61 |
this.format = TXMPreferences.getString(SpecificitiesPreferences.PREFERENCES_NODE, SpecificitiesPreferences.FORMAT);
|
|
| 61 |
this.format = TXMPreferences.getString(SpecificitiesPreferences.FORMAT, SpecificitiesPreferences.PREFERENCES_NODE);
|
|
| 62 | 62 |
if (format == null || format.trim().length() == 0) format = "%,.1f"; //$NON-NLS-1$ |
| 63 | 63 |
} |
| 64 | 64 |
|
| tmp/org.txm.specificities.rcp/src/org/txm/specificities/rcp/handlers/ComputeSpecifities.java (revision 403) | ||
|---|---|---|
| 43 | 43 |
import org.txm.core.preferences.TXMPreferences; |
| 44 | 44 |
import org.txm.lexicaltable.core.functions.LexicalTable; |
| 45 | 45 |
import org.txm.lexicaltable.core.preferences.LexicalTablePreferences; |
| 46 |
import org.txm.rcp.editors.TXMEditorPart; |
|
| 47 |
import org.txm.rcp.editors.TXMResultEditorInput; |
|
| 46 | 48 |
import org.txm.rcp.handlers.BaseAbstractHandler; |
| 47 | 49 |
import org.txm.rcp.JobsTimer; |
| 48 | 50 |
import org.txm.rcp.Messages; |
| ... | ... | |
| 112 | 114 |
return null; |
| 113 | 115 |
} |
| 114 | 116 |
Object s = selection.getFirstElement(); |
| 115 |
final int maxScore = TXMPreferences.getInt(SpecificitiesPreferences.PREFERENCES_NODE, SpecificitiesPreferences.MAX_SCORE);
|
|
| 117 |
final int maxScore = TXMPreferences.getInt(SpecificitiesPreferences.MAX_SCORE, SpecificitiesPreferences.PREFERENCES_NODE);
|
|
| 116 | 118 |
if(s instanceof Partition) {
|
| 117 | 119 |
final Partition partition = (Partition) selection.getFirstElement(); |
| 118 |
final int Fmin = TXMPreferences.getInt(LexicalTablePreferences.PREFERENCES_NODE, LexicalTablePreferences.F_MIN);
|
|
| 120 |
final int Fmin = TXMPreferences.getInt(LexicalTablePreferences.F_MIN, LexicalTablePreferences.PREFERENCES_NODE);
|
|
| 119 | 121 |
|
| 120 | 122 |
final ComputeSpecificitiesDialog d = new ComputeSpecificitiesDialog(window.getShell(), partition, false); |
| 121 | 123 |
int code = d.open(); |
| ... | ... | |
| 350 | 352 |
else if(s instanceof SpecificitesResult) {
|
| 351 | 353 |
SpecificitesResult specifRes = (SpecificitesResult) s; |
| 352 | 354 |
Partition partition = null; |
| 353 |
IEditorInput editorInput = null;
|
|
| 355 |
TXMResultEditorInput editorInput = null;
|
|
| 354 | 356 |
|
| 355 | 357 |
if(specifRes.getLexicalTable() != null) {
|
| 356 | 358 |
if(specifRes.getLexicalTable().getPartition() != null) {
|
| ... | ... | |
| 365 | 367 |
editorInput = new SpecificitiesResultEditorInput(specifRes, specifRes.getCorpus()); |
| 366 | 368 |
} |
| 367 | 369 |
|
| 368 |
IWorkbenchPage page = window.getActivePage(); |
|
| 369 |
try {
|
|
| 370 |
page.openEditor(editorInput, SpecificitiesTableEditor.ID); |
|
| 371 |
} |
|
| 372 |
catch(PartInitException e) {
|
|
| 373 |
System.err.println(Messages.CorporaView_5 + e); |
|
| 374 |
} |
|
| 370 |
TXMEditorPart.openEditor(editorInput, SpecificitiesTableEditor.ID); |
|
| 375 | 371 |
} |
| 376 | 372 |
|
| 377 | 373 |
return null; |
| tmp/org.txm.specificities.rcp/src/org/txm/specificities/rcp/handlers/ComputeSpecifictiesBarChart.java (revision 403) | ||
|---|---|---|
| 87 | 87 |
specificitiesResult.setSelectedSpecificitiesIndex(specificteIndices); |
| 88 | 88 |
|
| 89 | 89 |
// Create and open the chart editor |
| 90 |
final ChartEditorPart editor = SWTChartsComponentsProvider.getCurrent().openEditor(specificitiesResult, SpecificitiesPreferences.PREFERENCES_NODE);
|
|
| 90 |
final ChartEditorPart editor = SWTChartsComponentsProvider.getCurrent().openEditor(specificitiesResult); |
|
| 91 | 91 |
editor.getEditorInput().setAlwaysRecreateEditor(true); |
| 92 | 92 |
|
| 93 | 93 |
|
| ... | ... | |
| 98 | 98 |
final ToolItem groupBarsByLines = new ToolItem(toolBar, SWT.CHECK); |
| 99 | 99 |
groupBarsByLines.setToolTipText(SpecificitiesUIMessages.SpecificitiesPreferencePage_4); |
| 100 | 100 |
groupBarsByLines.setImage(IImageKeys.getImage(ComputeSpecifities.class, "icons/silk_group_bars_by_lines.png")); |
| 101 |
groupBarsByLines.setSelection(TXMPreferences.getBoolean(SpecificitiesPreferences.PREFERENCES_NODE, editor.getResultData(), SpecificitiesPreferences.CHART_TRANSPOSE));
|
|
| 101 |
groupBarsByLines.setSelection(specificitiesResult.getBooleanParameterValue(SpecificitiesPreferences.CHART_TRANSPOSE));
|
|
| 102 | 102 |
groupBarsByLines.addSelectionListener(new SelectionListener() {
|
| 103 | 103 |
|
| 104 | 104 |
@Override |
| tmp/org.txm.specificities.core/src/org/txm/specificities/core/functions/Chi2.java (revision 403) | ||
|---|---|---|
| 1 |
package org.txm.specificities.core.functions; |
|
| 2 |
|
|
| 3 |
import org.txm.functions.contrasts.Contrast; |
|
| 4 |
import org.txm.lexicaltable.core.functions.LexicalTable; |
|
| 5 |
import org.txm.lexicaltable.core.statsengine.data.ILexicalTable; |
|
| 6 |
import org.txm.searchengine.cqp.clientExceptions.CqiClientException; |
|
| 7 |
import org.txm.searchengine.cqp.corpus.Corpus; |
|
| 8 |
import org.txm.searchengine.cqp.corpus.Partition; |
|
| 9 |
import org.txm.searchengine.cqp.corpus.Property; |
|
| 10 |
import org.txm.searchengine.cqp.corpus.Subcorpus; |
|
| 11 |
import org.txm.statsengine.core.StatException; |
|
| 12 |
import org.txm.statsengine.r.core.RWorkspace; |
|
| 13 |
|
|
| 14 |
public class Chi2 extends Contrast {
|
|
| 15 |
|
|
| 16 |
private ILexicalTable itable; |
|
| 17 |
|
|
| 18 |
public Chi2(Corpus corpus, Subcorpus subcorpus, Property property) |
|
| 19 |
throws StatException, CqiClientException {
|
|
| 20 |
super(corpus, subcorpus, property); |
|
| 21 |
} |
|
| 22 |
|
|
| 23 |
public Chi2(Partition partition, Property property, int Fmin) |
|
| 24 |
throws StatException, CqiClientException {
|
|
| 25 |
super(partition, property, Fmin); |
|
| 26 |
} |
|
| 27 |
|
|
| 28 |
|
|
| 29 |
public Chi2(LexicalTable table) {
|
|
| 30 |
super(table); |
|
| 31 |
} |
|
| 32 |
|
|
| 33 |
@Override |
|
| 34 |
public boolean compute() throws StatException {
|
|
| 35 |
itable = table.getData(); |
|
| 36 |
colNames = itable.getColNames().asStringsArray(); |
|
| 37 |
rowNames = itable.getRowNames().asStringsArray(); |
|
| 38 |
frequencies = RWorkspace.getRWorkspaceInstance().evalToInt2D(itable.getSymbol()); |
|
| 39 |
|
|
| 40 |
// compute |
|
| 41 |
String cmd = "mat <- "+itable.getSymbol()+"\n"+ //$NON-NLS-1$ //$NON-NLS-2$ |
|
| 42 |
" mat2 <- rowSums(mat) %o% colSums(mat) / sum(mat)"+"\n"+ //$NON-NLS-1$ //$NON-NLS-2$ |
|
| 43 |
symbol +" <- (mat - mat2) ^ 2 / mat2"; //$NON-NLS-1$ |
|
| 44 |
indices = RWorkspace.getRWorkspaceInstance().evalToDouble2D(cmd); |
|
| 45 |
return true; |
|
| 46 |
} |
|
| 47 |
|
|
| 48 |
@Override |
|
| 49 |
public String getName() {
|
|
| 50 |
return "Chi2"; //$NON-NLS-1$ |
|
| 51 |
} |
|
| 52 |
|
|
| 53 |
@Override |
|
| 54 |
public String getSimpleName() {
|
|
| 55 |
// TODO Auto-generated method stub |
|
| 56 |
return null; |
|
| 57 |
} |
|
| 58 |
|
|
| 59 |
@Override |
|
| 60 |
public String getDetails() {
|
|
| 61 |
// TODO Auto-generated method stub |
|
| 62 |
return null; |
|
| 63 |
} |
|
| 64 |
|
|
| 65 |
@Override |
|
| 66 |
public void clean() {
|
|
| 67 |
// TODO Auto-generated method stub |
|
| 68 |
|
|
| 69 |
} |
|
| 70 |
} |
|
| tmp/org.txm.specificities.core/src/org/txm/specificities/core/functions/SpecificitesException.java (revision 403) | ||
|---|---|---|
| 1 |
// Copyright © 2010-2013 ENS de Lyon. |
|
| 2 |
// Copyright © 2007-2010 ENS de Lyon, CNRS, INRP, University of |
|
| 3 |
// Lyon 2, University of Franche-Comté, University of Nice |
|
| 4 |
// Sophia Antipolis, University of Paris 3. |
|
| 5 |
// |
|
| 6 |
// The TXM platform is free software: you can redistribute it |
|
| 7 |
// and/or modify it under the terms of the GNU General Public |
|
| 8 |
// License as published by the Free Software Foundation, |
|
| 9 |
// either version 2 of the License, or (at your option) any |
|
| 10 |
// later version. |
|
| 11 |
// |
|
| 12 |
// The TXM platform is distributed in the hope that it will be |
|
| 13 |
// useful, but WITHOUT ANY WARRANTY; without even the implied |
|
| 14 |
// warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR |
|
| 15 |
// PURPOSE. See the GNU General Public License for more |
|
| 16 |
// details. |
|
| 17 |
// |
|
| 18 |
// You should have received a copy of the GNU General |
|
| 19 |
// Public License along with the TXM platform. If not, see |
|
| 20 |
// http://www.gnu.org/licenses. |
|
| 21 |
// |
|
| 22 |
// |
|
| 23 |
// |
|
| 24 |
// $LastChangedDate: 2013-05-06 17:38:43 +0200 (lun., 06 mai 2013) $ |
|
| 25 |
// $LastChangedRevision: 2386 $ |
|
| 26 |
// $LastChangedBy: mdecorde $ |
|
| 27 |
// |
|
| 28 |
package org.txm.specificities.core.functions; |
|
| 29 |
|
|
| 30 |
// TODO: Auto-generated Javadoc |
|
| 31 |
/** |
|
| 32 |
* The Class SpecificitesException. |
|
| 33 |
* |
|
| 34 |
* @author sloiseau |
|
| 35 |
*/ |
|
| 36 |
public class SpecificitesException extends Exception {
|
|
| 37 |
|
|
| 38 |
/** The Constant serialVersionUID. */ |
|
| 39 |
private static final long serialVersionUID = 4206288552541531386L; |
|
| 40 |
|
|
| 41 |
/** |
|
| 42 |
* Instantiates a new specificites exception. |
|
| 43 |
*/ |
|
| 44 |
public SpecificitesException() {
|
|
| 45 |
super(); |
|
| 46 |
// TODO Auto-generated constructor stub |
|
| 47 |
} |
|
| 48 |
|
|
| 49 |
/** |
|
| 50 |
* Instantiates a new specificites exception. |
|
| 51 |
* |
|
| 52 |
* @param arg0 the arg0 |
|
| 53 |
* @param arg1 the arg1 |
|
| 54 |
*/ |
|
| 55 |
public SpecificitesException(String arg0, Throwable arg1) {
|
|
| 56 |
super(arg0, arg1); |
|
| 57 |
// TODO Auto-generated constructor stub |
|
| 58 |
} |
|
| 59 |
|
|
| 60 |
/** |
|
| 61 |
* Instantiates a new specificites exception. |
|
| 62 |
* |
|
| 63 |
* @param arg0 the arg0 |
|
| 64 |
*/ |
|
| 65 |
public SpecificitesException(String arg0) {
|
|
| 66 |
super(arg0); |
|
| 67 |
// TODO Auto-generated constructor stub |
|
| 68 |
} |
|
| 69 |
|
|
| 70 |
/** |
|
| 71 |
* Instantiates a new specificites exception. |
|
| 72 |
* |
|
| 73 |
* @param arg0 the arg0 |
|
| 74 |
*/ |
|
| 75 |
public SpecificitesException(Throwable arg0) {
|
|
| 76 |
super(arg0); |
|
| 77 |
// TODO Auto-generated constructor stub |
|
| 78 |
} |
|
| 79 |
} |
|
| tmp/org.txm.specificities.core/src/org/txm/specificities/core/functions/Specificites2.java (revision 403) | ||
|---|---|---|
| 1 |
package org.txm.specificities.core.functions; |
|
| 2 |
|
|
| 3 |
import org.txm.functions.contrasts.Contrast; |
|
| 4 |
import org.txm.lexicaltable.core.functions.LexicalTable; |
|
| 5 |
import org.txm.lexicaltable.core.statsengine.data.ILexicalTable; |
|
| 6 |
import org.txm.searchengine.cqp.clientExceptions.CqiClientException; |
|
| 7 |
import org.txm.searchengine.cqp.corpus.Corpus; |
|
| 8 |
import org.txm.searchengine.cqp.corpus.Partition; |
|
| 9 |
import org.txm.searchengine.cqp.corpus.Property; |
|
| 10 |
import org.txm.searchengine.cqp.corpus.Subcorpus; |
|
| 11 |
import org.txm.specificities.core.statsengine.r.function.SpecificitiesImpl; |
|
| 12 |
import org.txm.statsengine.core.StatException; |
|
| 13 |
import org.txm.statsengine.r.core.RWorkspace; |
|
| 14 |
|
|
| 15 |
public class Specificites2 extends Contrast {
|
|
| 16 |
|
|
| 17 |
private ILexicalTable itable; |
|
| 18 |
|
|
| 19 |
public Specificites2(Corpus corpus, Subcorpus subcorpus, Property property) |
|
| 20 |
throws StatException, CqiClientException {
|
|
| 21 |
super(corpus, subcorpus, property); |
|
| 22 |
} |
|
| 23 |
|
|
| 24 |
public Specificites2(Partition partition, Property property, int Fmin) |
|
| 25 |
throws StatException, CqiClientException {
|
|
| 26 |
super(partition, property, Fmin); |
|
| 27 |
} |
|
| 28 |
|
|
| 29 |
|
|
| 30 |
public Specificites2(LexicalTable table) {
|
|
| 31 |
super(table); |
|
| 32 |
} |
|
| 33 |
|
|
| 34 |
public boolean compute() throws StatException {
|
|
| 35 |
itable = table.getData(); |
|
| 36 |
colNames = itable.getColNames().asStringsArray(); |
|
| 37 |
rowNames = itable.getRowNames().asStringsArray(); |
|
| 38 |
frequencies = RWorkspace.getRWorkspaceInstance().evalToInt2D(itable.getSymbol()); |
|
| 39 |
|
|
| 40 |
// compute |
|
| 41 |
indices = new SpecificitiesImpl(itable).getScores(); //$NON-NLS-1$ |
|
| 42 |
return true; |
|
| 43 |
} |
|
| 44 |
|
|
| 45 |
@Override |
|
| 46 |
public String getName() {
|
|
| 47 |
return "Specif2"; //$NON-NLS-1$ |
|
| 48 |
} |
|
| 49 |
|
|
| 50 |
@Override |
|
| 51 |
public String getSimpleName() {
|
|
| 52 |
// TODO Auto-generated method stub |
|
| 53 |
return null; |
|
| 54 |
} |
|
| 55 |
|
|
| 56 |
@Override |
|
| 57 |
public String getDetails() {
|
|
| 58 |
// TODO Auto-generated method stub |
|
| 59 |
return null; |
|
| 60 |
} |
|
| 61 |
|
|
| 62 |
@Override |
|
| 63 |
public void clean() {
|
|
| 64 |
// TODO Auto-generated method stub |
|
| 65 |
|
|
| 66 |
} |
|
| 67 |
} |
|
| tmp/org.txm.specificities.core/src/org/txm/specificities/core/functions/SpecificitesResult.java (revision 403) | ||
|---|---|---|
| 39 | 39 |
|
| 40 | 40 |
import org.rosuda.REngine.REXPMismatchException; |
| 41 | 41 |
import org.rosuda.REngine.Rserve.RserveException; |
| 42 |
import org.txm.functions.Function;
|
|
| 42 |
import org.txm.functions.TXMCommand;
|
|
| 43 | 43 |
import org.txm.lexicaltable.core.functions.LexicalTable; |
| 44 | 44 |
import org.txm.lexicaltable.core.functions.LexicalTableFactory; |
| 45 | 45 |
import org.txm.lexicon.core.corpusengine.cqp.Lexicon; |
| ... | ... | |
| 63 | 63 |
* @author sloiseau |
| 64 | 64 |
* |
| 65 | 65 |
*/ |
| 66 |
public class SpecificitesResult extends Function {
|
|
| 66 |
public class SpecificitesResult extends TXMCommand {
|
|
| 67 | 67 |
|
| 68 | 68 |
public static int MAXSPECIF = 1000; |
| 69 | 69 |
|
| tmp/org.txm.specificities.core/src/org/txm/specificities/core/functions/___SpecificitesException.java (revision 403) | ||
|---|---|---|
| 1 |
// Copyright © 2010-2013 ENS de Lyon. |
|
| 2 |
// Copyright © 2007-2010 ENS de Lyon, CNRS, INRP, University of |
|
| 3 |
// Lyon 2, University of Franche-Comté, University of Nice |
|
| 4 |
// Sophia Antipolis, University of Paris 3. |
|
| 5 |
// |
|
| 6 |
// The TXM platform is free software: you can redistribute it |
|
| 7 |
// and/or modify it under the terms of the GNU General Public |
|
| 8 |
// License as published by the Free Software Foundation, |
|
| 9 |
// either version 2 of the License, or (at your option) any |
|
| 10 |
// later version. |
|
| 11 |
// |
|
| 12 |
// The TXM platform is distributed in the hope that it will be |
|
| 13 |
// useful, but WITHOUT ANY WARRANTY; without even the implied |
|
| 14 |
// warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR |
|
| 15 |
// PURPOSE. See the GNU General Public License for more |
|
| 16 |
// details. |
|
| 17 |
// |
|
| 18 |
// You should have received a copy of the GNU General |
|
| 19 |
// Public License along with the TXM platform. If not, see |
|
| 20 |
// http://www.gnu.org/licenses. |
|
| 21 |
// |
|
| 22 |
// |
|
| 23 |
// |
|
| 24 |
// $LastChangedDate: 2013-05-06 17:38:43 +0200 (lun., 06 mai 2013) $ |
|
| 25 |
// $LastChangedRevision: 2386 $ |
|
| 26 |
// $LastChangedBy: mdecorde $ |
|
| 27 |
// |
|
| 28 |
package org.txm.specificities.core.functions; |
|
| 29 |
|
|
| 30 |
// TODO: Auto-generated Javadoc |
|
| 31 |
/** |
|
| 32 |
* The Class SpecificitesException. |
|
| 33 |
* |
|
| 34 |
* @author sloiseau |
|
| 35 |
*/ |
|
| 36 |
//FIXME: not used? |
|
| 37 |
public class ___SpecificitesException extends Exception {
|
|
| 38 |
|
|
| 39 |
/** The Constant serialVersionUID. */ |
|
| 40 |
private static final long serialVersionUID = 4206288552541531386L; |
|
| 41 |
|
|
| 42 |
/** |
|
| 43 |
* Instantiates a new specificites exception. |
|
| 44 |
*/ |
|
| 45 |
public ___SpecificitesException() {
|
|
| 46 |
super(); |
|
| 47 |
// TODO Auto-generated constructor stub |
|
| 48 |
} |
|
| 49 |
|
|
| 50 |
/** |
|
| 51 |
* Instantiates a new specificites exception. |
|
| 52 |
* |
|
| 53 |
* @param arg0 the arg0 |
|
| 54 |
* @param arg1 the arg1 |
|
| 55 |
*/ |
|
| 56 |
public ___SpecificitesException(String arg0, Throwable arg1) {
|
|
| 57 |
super(arg0, arg1); |
|
| 58 |
// TODO Auto-generated constructor stub |
|
| 59 |
} |
|
| 60 |
|
|
| 61 |
/** |
|
| 62 |
* Instantiates a new specificites exception. |
|
| 63 |
* |
|
| 64 |
* @param arg0 the arg0 |
|
| 65 |
*/ |
|
| 66 |
public ___SpecificitesException(String arg0) {
|
|
| 67 |
super(arg0); |
|
| 68 |
// TODO Auto-generated constructor stub |
|
| 69 |
} |
|
| 70 |
|
|
| 71 |
/** |
|
| 72 |
* Instantiates a new specificites exception. |
|
| 73 |
* |
|
| 74 |
* @param arg0 the arg0 |
|
| 75 |
*/ |
|
| 76 |
public ___SpecificitesException(Throwable arg0) {
|
|
| 77 |
super(arg0); |
|
| 78 |
// TODO Auto-generated constructor stub |
|
| 79 |
} |
|
| 80 |
} |
|
| 0 | 81 | |
| tmp/org.txm.specificities.core/src/org/txm/specificities/core/chartsengine/jfreechart/JFCSpecificitiesBarChartCreator.java (revision 403) | ||
|---|---|---|
| 17 | 17 |
import org.txm.chartsengine.jfreechart.core.themes.base.ExtendedNumberAxis; |
| 18 | 18 |
import org.txm.chartsengine.jfreechart.core.themes.base.SymbolAxisBetweenTicks; |
| 19 | 19 |
import org.txm.core.preferences.TXMPreferences; |
| 20 |
import org.txm.core.results.ITXMResult;
|
|
| 20 |
import org.txm.core.results.TXMResult; |
|
| 21 | 21 |
import org.txm.specificities.core.functions.SpecificitesResult; |
| 22 | 22 |
import org.txm.specificities.core.messages.SpecificitiesCoreMessages; |
| 23 | 23 |
import org.txm.specificities.core.preferences.SpecificitiesPreferences; |
| ... | ... | |
| 33 | 33 |
} |
| 34 | 34 |
|
| 35 | 35 |
@Override |
| 36 |
public JFreeChart createChart(ITXMResult result, String preferencesNode) {
|
|
| 36 |
public JFreeChart createChart(TXMResult result) {
|
|
| 37 | 37 |
|
| 38 | 38 |
SpecificitesResult specificitiesResult = (SpecificitesResult) result; |
| 39 | 39 |
|
| 40 | 40 |
// parameters |
| 41 |
boolean transpose = TXMPreferences.getBoolean(preferencesNode, result, SpecificitiesPreferences.CHART_TRANSPOSE); |
|
| 42 |
boolean drawBars = TXMPreferences.getBoolean(preferencesNode, result, SpecificitiesPreferences.CHART_DRAW_BARS); |
|
| 43 |
boolean drawLines = TXMPreferences.getBoolean(preferencesNode, result, SpecificitiesPreferences.CHART_DRAW_LINES); |
|
| 44 |
float banality = TXMPreferences.getFloat(preferencesNode, result, SpecificitiesPreferences.CHART_BANALITY); |
|
| 41 |
boolean drawBars = result.getBooleanParameterValue(SpecificitiesPreferences.CHART_DRAW_BARS); |
|
| 42 |
boolean drawLines = result.getBooleanParameterValue(SpecificitiesPreferences.CHART_DRAW_LINES); |
|
| 43 |
float banality = result.getFloatParameterValue(SpecificitiesPreferences.CHART_BANALITY); |
|
| 45 | 44 |
|
| 46 | 45 |
JFreeChart chart = null; |
| 47 | 46 |
|
| ... | ... | |
| 85 | 84 |
} |
| 86 | 85 |
|
| 87 | 86 |
@Override |
| 88 |
public void updateChart(Object chart, ITXMResult result, String preferencesNode) {
|
|
| 87 |
public void updateChart(Object chart, TXMResult result) {
|
|
| 89 | 88 |
|
| 90 | 89 |
SpecificitesResult specificitiesResult = (SpecificitesResult) result; |
| 91 | 90 |
JFreeChart jfcChart = (JFreeChart) chart; |
| ... | ... | |
| 100 | 99 |
String[] xAxisSymbols; |
| 101 | 100 |
|
| 102 | 101 |
// Transpose the data set |
| 103 |
if(TXMPreferences.getBoolean(preferencesNode, result, SpecificitiesPreferences.CHART_TRANSPOSE)) {
|
|
| 102 |
if(result.getBooleanParameterValue(SpecificitiesPreferences.CHART_TRANSPOSE)) {
|
|
| 104 | 103 |
xAxisSymbols = new String[specificitiesResult.getSelectedTypeNames().length]; |
| 105 | 104 |
|
| 106 | 105 |
for(int i = 0; i < specificitiesResult.getSelectedPartNames().length; i++) {
|
| ... | ... | |
| 139 | 138 |
minimumValue = 0; |
| 140 | 139 |
} |
| 141 | 140 |
if(maximumValue < 0) {
|
| 142 |
maximumValue = TXMPreferences.getFloat(preferencesNode, result, SpecificitiesPreferences.CHART_BANALITY);
|
|
| 141 |
maximumValue = result.getFloatParameterValue(SpecificitiesPreferences.CHART_BANALITY);
|
|
| 143 | 142 |
} |
| 144 | 143 |
// Custom range axis to cut the values to minimum and maximum values |
| 145 | 144 |
jfcChart.getXYPlot().setRangeAxis(new ExtendedNumberAxis((NumberAxis) jfcChart.getXYPlot().getRangeAxis(), true, true, minimumValue, maximumValue)); |
| ... | ... | |
| 147 | 146 |
jfcChart.getXYPlot().setDomainAxis(new SymbolAxisBetweenTicks(SpecificitiesCoreMessages.Charts_X_AXIS_LABEL, xAxisSymbols)); |
| 148 | 147 |
|
| 149 | 148 |
|
| 150 |
super.updateChart(chart, result, preferencesNode);
|
|
| 149 |
super.updateChart(chart, result); |
|
| 151 | 150 |
|
| 152 | 151 |
} |
| 153 | 152 |
|
| tmp/org.txm.specificities.core/src/org/txm/specificities/core/chartsengine/r/RSpecificitiesBarChartCreator.java (revision 403) | ||
|---|---|---|
| 5 | 5 |
import org.txm.chartsengine.core.preferences.ChartsEnginePreferences; |
| 6 | 6 |
import org.txm.chartsengine.r.core.RChartCreator; |
| 7 | 7 |
import org.txm.core.preferences.TXMPreferences; |
| 8 |
import org.txm.core.results.ITXMResult;
|
|
| 8 |
import org.txm.core.results.TXMResult; |
|
| 9 | 9 |
import org.txm.specificities.core.functions.SpecificitesResult; |
| 10 | 10 |
import org.txm.specificities.core.messages.SpecificitiesCoreMessages; |
| 11 | 11 |
import org.txm.specificities.core.preferences.SpecificitiesPreferences; |
| ... | ... | |
| 27 | 27 |
} |
| 28 | 28 |
|
| 29 | 29 |
@Override |
| 30 |
public Object createChart(ITXMResult result, String preferencesNode) {
|
|
| 30 |
public Object createChart(TXMResult result) {
|
|
| 31 | 31 |
return null; |
| 32 | 32 |
} |
| 33 | 33 |
|
| 34 | 34 |
|
| 35 | 35 |
@Override |
| 36 |
public File createChartFile(ITXMResult result, File file, String preferencesNode) {
|
|
| 36 |
public File createChartFile(TXMResult result, File file) {
|
|
| 37 | 37 |
|
| 38 | 38 |
try {
|
| 39 | 39 |
|
| 40 | 40 |
SpecificitesResult specificitiesResult = (SpecificitesResult) result; |
| 41 | 41 |
|
| 42 | 42 |
// parameters |
| 43 |
boolean transpose = TXMPreferences.getBoolean(preferencesNode, result, SpecificitiesPreferences.CHART_TRANSPOSE);
|
|
| 44 |
boolean drawBars = TXMPreferences.getBoolean(preferencesNode, result, SpecificitiesPreferences.CHART_DRAW_BARS);
|
|
| 45 |
boolean drawLines = TXMPreferences.getBoolean(preferencesNode, result, SpecificitiesPreferences.CHART_DRAW_LINES);
|
|
| 46 |
float banality = TXMPreferences.getFloat(preferencesNode, result, SpecificitiesPreferences.CHART_BANALITY);
|
|
| 47 |
int renderingColorMode = TXMPreferences.getInt(preferencesNode, result, ChartsEnginePreferences.RENDERING_COLORS_MODE);
|
|
| 43 |
boolean transpose = result.getBooleanParameterValue(SpecificitiesPreferences.CHART_TRANSPOSE);
|
|
| 44 |
boolean drawBars = result.getBooleanParameterValue(SpecificitiesPreferences.CHART_DRAW_BARS);
|
|
| 45 |
boolean drawLines = result.getBooleanParameterValue(SpecificitiesPreferences.CHART_DRAW_LINES);
|
|
| 46 |
float banality = result.getFloatParameterValue(SpecificitiesPreferences.CHART_BANALITY);
|
|
| 47 |
int renderingColorMode = result.getIntParameterValue(ChartsEnginePreferences.RENDERING_COLORS_MODE);
|
|
| 48 | 48 |
|
| 49 | 49 |
//boolean grayscale = (renderingColorMode == ChartsEngine.RENDERING_GRAYSCALE_MODE); |
| 50 | 50 |
|
| ... | ... | |
| 79 | 79 |
|
| 80 | 80 |
// Title |
| 81 | 81 |
String title = ""; |
| 82 |
if(TXMPreferences.getBoolean(preferencesNode, result, ChartsEnginePreferences.SHOW_TITLE)) {
|
|
| 82 |
if(result.getBooleanParameterValue(ChartsEnginePreferences.SHOW_TITLE)) {
|
|
| 83 | 83 |
title = specificitiesResult.getName(); |
| 84 | 84 |
} |
| 85 | 85 |
|
| ... | ... | |
| 151 | 151 |
|
| 152 | 152 |
|
| 153 | 153 |
// Grid |
| 154 |
if(TXMPreferences.getBoolean(preferencesNode, result, ChartsEnginePreferences.SHOW_GRID)) {
|
|
| 154 |
if(result.getBooleanParameterValue(ChartsEnginePreferences.SHOW_GRID)) {
|
|
| 155 | 155 |
cmd += this.getChartsEngine().getGridPlotCmd(); |
| 156 | 156 |
} |
| 157 | 157 |
|
| 158 | 158 |
// Legend |
| 159 |
if(TXMPreferences.getBoolean(preferencesNode, result, ChartsEnginePreferences.SHOW_LEGEND)) {
|
|
| 159 |
if(result.getBooleanParameterValue(ChartsEnginePreferences.SHOW_LEGEND)) {
|
|
| 160 | 160 |
if (drawBars) {
|
| 161 | 161 |
cmd += "legend(\"topright\", "+legend+", inset = c(-0.2,0), col = colors, fill = colors, xpd=TRUE);\n"; //$NON-NLS-1$ //$NON-NLS-2$ |
| 162 | 162 |
} |
| tmp/org.txm.specificities.core/src/org/txm/functions/contrasts/Specificites2.java (revision 403) | ||
|---|---|---|
| 1 |
package org.txm.functions.contrasts; |
|
| 2 |
|
|
| 3 |
import org.txm.lexicaltable.core.functions.LexicalTable; |
|
| 4 |
import org.txm.lexicaltable.core.statsengine.data.ILexicalTable; |
|
| 5 |
import org.txm.searchengine.cqp.clientExceptions.CqiClientException; |
|
| 6 |
import org.txm.searchengine.cqp.corpus.Corpus; |
|
| 7 |
import org.txm.searchengine.cqp.corpus.Partition; |
|
| 8 |
import org.txm.searchengine.cqp.corpus.Property; |
|
| 9 |
import org.txm.searchengine.cqp.corpus.Subcorpus; |
|
| 10 |
import org.txm.specificities.core.statsengine.r.function.SpecificitiesImpl; |
|
| 11 |
import org.txm.statsengine.core.StatException; |
|
| 12 |
import org.txm.statsengine.r.core.RWorkspace; |
|
| 13 |
|
|
| 14 |
public class Specificites2 extends Contrast {
|
|
| 15 |
|
|
| 16 |
private ILexicalTable itable; |
|
| 17 |
|
|
| 18 |
public Specificites2(Corpus corpus, Subcorpus subcorpus, Property property) |
|
| 19 |
throws StatException, CqiClientException {
|
|
| 20 |
super(corpus, subcorpus, property); |
|
| 21 |
} |
|
| 22 |
|
|
| 23 |
public Specificites2(Partition partition, Property property, int Fmin) |
|
| 24 |
throws StatException, CqiClientException {
|
|
| 25 |
super(partition, property, Fmin); |
|
| 26 |
} |
|
| 27 |
|
|
| 28 |
|
|
| 29 |
public Specificites2(LexicalTable table) {
|
|
| 30 |
super(table); |
|
| 31 |
} |
|
| 32 |
|
|
| 33 |
public boolean compute() throws StatException {
|
|
| 34 |
itable = table.getData(); |
|
| 35 |
colNames = itable.getColNames().asStringsArray(); |
|
| 36 |
rowNames = itable.getRowNames().asStringsArray(); |
|
| 37 |
frequencies = RWorkspace.getRWorkspaceInstance().evalToInt2D(itable.getSymbol()); |
|
| 38 |
|
|
| 39 |
// compute |
|
| 40 |
indices = new SpecificitiesImpl(itable).getScores(); //$NON-NLS-1$ |
|
| 41 |
return true; |
|
| 42 |
} |
|
| 43 |
|
|
| 44 |
@Override |
|
| 45 |
public String getName() {
|
|
| 46 |
return "Specif2"; //$NON-NLS-1$ |
|
| 47 |
} |
|
| 48 |
|
|
| 49 |
@Override |
|
| 50 |
public String getSimpleName() {
|
|
| 51 |
// TODO Auto-generated method stub |
|
| 52 |
return null; |
|
| 53 |
} |
|
| 54 |
|
|
| 55 |
@Override |
|
| 56 |
public String getDetails() {
|
|
| 57 |
// TODO Auto-generated method stub |
|
| 58 |
return null; |
|
| 59 |
} |
|
| 60 |
|
|
| 61 |
@Override |
|
| 62 |
public void clean() {
|
|
| 63 |
// TODO Auto-generated method stub |
|
| 64 |
|
|
| 65 |
} |
|
| 66 |
} |
|
| 0 | 67 | |
| tmp/org.txm.specificities.core/src/org/txm/functions/contrasts/Contrasts.java (revision 403) | ||
|---|---|---|
| 4 | 4 |
|
| 5 | 5 |
import org.txm.core.messages.TXMCoreMessages; |
| 6 | 6 |
import org.txm.lexicaltable.core.functions.LexicalTable; |
| 7 |
import org.txm.specificities.core.functions.Chi2; |
|
| 8 |
import org.txm.specificities.core.functions.Specificites2; |
|
| 9 | 7 |
|
| 10 | 8 |
public class Contrasts {
|
| 11 | 9 |
LexicalTable table; |
| tmp/org.txm.specificities.core/src/org/txm/functions/contrasts/Chi2.java (revision 403) | ||
|---|---|---|
| 1 |
package org.txm.functions.contrasts; |
|
| 2 |
|
|
| 3 |
import org.txm.lexicaltable.core.functions.LexicalTable; |
|
| 4 |
import org.txm.lexicaltable.core.statsengine.data.ILexicalTable; |
|
| 5 |
import org.txm.searchengine.cqp.clientExceptions.CqiClientException; |
|
| 6 |
import org.txm.searchengine.cqp.corpus.Corpus; |
|
| 7 |
import org.txm.searchengine.cqp.corpus.Partition; |
|
| 8 |
import org.txm.searchengine.cqp.corpus.Property; |
|
| 9 |
import org.txm.searchengine.cqp.corpus.Subcorpus; |
|
| 10 |
import org.txm.statsengine.core.StatException; |
|
| 11 |
import org.txm.statsengine.r.core.RWorkspace; |
|
| 12 |
|
|
| 13 |
public class Chi2 extends Contrast {
|
|
| 14 |
|
|
| 15 |
private ILexicalTable itable; |
|
| 16 |
|
|
| 17 |
public Chi2(Corpus corpus, Subcorpus subcorpus, Property property) |
|
| 18 |
throws StatException, CqiClientException {
|
|
| 19 |
super(corpus, subcorpus, property); |
|
| 20 |
} |
|
| 21 |
|
|
| 22 |
public Chi2(Partition partition, Property property, int Fmin) |
|
| 23 |
throws StatException, CqiClientException {
|
|
| 24 |
super(partition, property, Fmin); |
|
| 25 |
} |
|
| 26 |
|
|
| 27 |
|
|
| 28 |
public Chi2(LexicalTable table) {
|
|
| 29 |
super(table); |
|
| 30 |
} |
|
| 31 |
|
|
| 32 |
@Override |
|
| 33 |
public boolean compute() throws StatException {
|
|
| 34 |
itable = table.getData(); |
|
| 35 |
colNames = itable.getColNames().asStringsArray(); |
|
| 36 |
rowNames = itable.getRowNames().asStringsArray(); |
|
| 37 |
frequencies = RWorkspace.getRWorkspaceInstance().evalToInt2D(itable.getSymbol()); |
|
| 38 |
|
|
| 39 |
// compute |
|
| 40 |
String cmd = "mat <- "+itable.getSymbol()+"\n"+ //$NON-NLS-1$ //$NON-NLS-2$ |
|
| 41 |
" mat2 <- rowSums(mat) %o% colSums(mat) / sum(mat)"+"\n"+ //$NON-NLS-1$ //$NON-NLS-2$ |
|
| 42 |
symbol +" <- (mat - mat2) ^ 2 / mat2"; //$NON-NLS-1$ |
|
| 43 |
indices = RWorkspace.getRWorkspaceInstance().evalToDouble2D(cmd); |
|
| 44 |
return true; |
|
| 45 |
} |
|
| 46 |
|
|
| 47 |
@Override |
|
| 48 |
public String getName() {
|
|
| 49 |
return "Chi2"; //$NON-NLS-1$ |
|
| 50 |
} |
|
| 51 |
|
|
| 52 |
@Override |
|
| 53 |
public String getSimpleName() {
|
|
| 54 |
// TODO Auto-generated method stub |
|
| 55 |
return null; |
|
| 56 |
} |
|
| 57 |
|
|
| 58 |
@Override |
|
| 59 |
public String getDetails() {
|
|
| 60 |
// TODO Auto-generated method stub |
|
| 61 |
return null; |
|
| 62 |
} |
|
| 63 |
|
|
| 64 |
@Override |
|
| 65 |
public void clean() {
|
|
| 66 |
// TODO Auto-generated method stub |
|
| 67 |
|
|
| 68 |
} |
|
| 69 |
} |
|
| 0 | 70 | |
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