Révision 3400
| TXM/trunk/org.txm.ahc.rcp/src/org/txm/ahc/rcp/handlers/ComputeAHC.java (revision 3400) | ||
|---|---|---|
| 99 | 99 |
|
| 100 | 100 |
// FIXME: SJ: problem here because we need the LT to be computed to make this check |
| 101 | 101 |
if (lexicalTable.hasBeenComputedOnce() && lexicalTable.getNColumns() < 4) {
|
| 102 |
MessageDialog.openError(window.getShell(), "Error", AHCCoreMessages.error_canNotComputeAHCOnLexicalTableWithLessThan4Columns);
|
|
| 102 |
MessageDialog.openError(window.getShell(), AHCCoreMessages.Error, AHCCoreMessages.error_canNotComputeAHCOnLexicalTableWithLessThan4Columns);
|
|
| 103 | 103 |
return null; |
| 104 | 104 |
} |
| 105 | 105 |
// FIXME: SJ: problem here because we need the LT has been computed to make this check |
| 106 | 106 |
if (lexicalTable.hasBeenComputedOnce() && lexicalTable.getNRows() < 4) {
|
| 107 |
MessageDialog.openError(window.getShell(), "Error", AHCCoreMessages.error_canNotComputeAHCWithLessThan4RowsInTheTable);
|
|
| 107 |
MessageDialog.openError(window.getShell(), AHCCoreMessages.Error, AHCCoreMessages.error_canNotComputeAHCWithLessThan4RowsInTheTable);
|
|
| 108 | 108 |
return null; |
| 109 | 109 |
} |
| 110 | 110 |
|
| ... | ... | |
| 137 | 137 |
ChartEditor.openEditor(ahc); |
| 138 | 138 |
} |
| 139 | 139 |
catch (Exception e) {
|
| 140 |
Log.severe("Failed to build the AHC for selection " + selection + ": " + e);
|
|
| 140 |
Log.severe(AHCCoreMessages.failToBuildTheAHCForSelectionP1DbldotP1 + selection + ": " + e); //$NON-NLS-2$
|
|
| 141 | 141 |
Log.printStackTrace(e); |
| 142 | 142 |
return null; |
| 143 | 143 |
} |
| TXM/trunk/org.txm.ahc.rcp/src/org/txm/ahc/rcp/adapters/AHCAdapterFactory.java (revision 3400) | ||
|---|---|---|
| 19 | 19 |
|
| 20 | 20 |
|
| 21 | 21 |
public static final ImageDescriptor ICON = AbstractUIPlugin.imageDescriptorFromPlugin(FrameworkUtil.getBundle(AHCAdapterFactory.class).getSymbolicName(), |
| 22 |
"platform:/plugin/" + FrameworkUtil.getBundle(AHCAdapterFactory.class).getSymbolicName() + "/icons/cah.png"); //$NON-NLS-1$ |
|
| 22 |
"platform:/plugin/" + FrameworkUtil.getBundle(AHCAdapterFactory.class).getSymbolicName() + "/icons/cah.png"); //$NON-NLS-1$ //$NON-NLS-2$
|
|
| 23 | 23 |
|
| 24 | 24 |
/** |
| 25 | 25 |
* Gets the adapter. |
| TXM/trunk/org.txm.ahc.core/src/org/txm/ahc/core/messages/messages.properties (revision 3400) | ||
|---|---|---|
| 2 | 2 |
#TXM messages generated by the PluginMessagesManager class |
| 3 | 3 |
#Tue Dec 18 10:24:08 CET 2018 |
| 4 | 4 |
|
| 5 |
AHC_computedWithTheP0MethodAndTheP1Metric=\ computed with the {0} method and the {1} metric.
|
|
| 5 | 6 |
P0classesOfP1 = {0} clusters of {1}.
|
| 6 | 7 |
|
| 7 | 8 |
RESULT_TYPE = HCA |
| 8 | 9 |
|
| 9 | 10 |
columns = columns |
| 10 | 11 |
|
| 12 |
common_ok= |
|
| 11 | 13 |
computingAHC = Computing AHC... |
| 14 |
Error=Error |
|
| 12 | 15 |
|
| 13 | 16 |
error_canNotComputeAHCOnLexicalTableWithLessThan4Columns = ** Can not compute AHC on lexical table with less than 4 columns in the table |
| 17 |
error_canNotComputeAHCWith= |
|
| 14 | 18 |
error_canNotComputeAHCWithLessThan4RowsInTheTable = ** Can not compute AHC with less than 4 rows in the table |
| 19 |
error_error2= |
|
| 15 | 20 |
error_errorWhileExportingCAHToTXT = ** Error while exporting HCA result. |
| 21 |
failToBuildTheAHCForSelectionP1DbldotP1=Failed to build the AHC for selection |
|
| 16 | 22 |
|
| 17 | 23 |
info_ahcOfTheP0LexcialTable = AHC of the {0} lexical table...
|
| 18 | 24 |
info_ahcOfTheP0PartitionCommaP1Property = AHC of {0} partition, {1} property...
|
| TXM/trunk/org.txm.ahc.core/src/org/txm/ahc/core/messages/AHCCoreMessages.java (revision 3400) | ||
|---|---|---|
| 14 | 14 |
|
| 15 | 15 |
private static final String BUNDLE_NAME = "org.txm.ahc.core.messages.messages"; //$NON-NLS-1$ |
| 16 | 16 |
|
| 17 |
public static String AHC_computedWithTheP0MethodAndTheP1Metric; |
|
| 18 |
|
|
| 17 | 19 |
public static String P0classesOfP1; |
| 18 | 20 |
|
| 19 | 21 |
public static String columns; |
| ... | ... | |
| 22 | 24 |
|
| 23 | 25 |
public static String RESULT_TYPE; |
| 24 | 26 |
|
| 27 |
public static String error_error2; |
|
| 28 |
|
|
| 25 | 29 |
public static String error_errorWhileExportingCAHToTXT; |
| 26 | 30 |
|
| 31 |
public static String common_ok; |
|
| 32 |
|
|
| 27 | 33 |
public static String computingAHC; |
| 34 |
|
|
| 35 |
public static String Error; |
|
| 28 | 36 |
|
| 29 | 37 |
public static String info_ahcOfTheP0PartitionCommaP1Property; |
| 30 | 38 |
|
| ... | ... | |
| 34 | 42 |
|
| 35 | 43 |
public static String error_canNotComputeAHCOnLexicalTableWithLessThan4Columns; |
| 36 | 44 |
|
| 45 |
public static String error_canNotComputeAHCWith; |
|
| 46 |
|
|
| 37 | 47 |
public static String error_canNotComputeAHCWithLessThan4RowsInTheTable; |
| 48 |
|
|
| 49 |
public static String failToBuildTheAHCForSelectionP1DbldotP1; |
|
| 38 | 50 |
|
| 39 | 51 |
|
| 40 | 52 |
|
| TXM/trunk/org.txm.ahc.core/src/org/txm/ahc/core/functions/AHC.java (revision 3400) | ||
|---|---|---|
| 288 | 288 |
@Override |
| 289 | 289 |
public boolean setParameters(TXMParameters parameters) {
|
| 290 | 290 |
// TODO Auto-generated method stub |
| 291 |
System.err.println("AHC.setParameters(): not yet implemented.");
|
|
| 291 |
System.err.println("AHC.setParameters() is not yet implemented."); //$NON-NLS-1$
|
|
| 292 | 292 |
return true; |
| 293 | 293 |
} |
| 294 | 294 |
|
| ... | ... | |
| 397 | 397 |
// FIXME: check this code for the CAH 3D chart implementation |
| 398 | 398 |
RWorkspace rw = RWorkspace.getRWorkspaceInstance(); |
| 399 | 399 |
for (int i = 0; i < 2; i++) { // 2 dimensions
|
| 400 |
REXP sv = rw.extractItemFromListByName(symbol, "data.clust[," + (i + 1) + "]"); //$NON-NLS-1$ |
|
| 400 |
REXP sv = rw.extractItemFromListByName(symbol, "data.clust[," + (i + 1) + "]"); //$NON-NLS-1$ //$NON-NLS-2$
|
|
| 401 | 401 |
double[] coords = RWorkspace.toDouble(sv); |
| 402 | 402 |
for (int j = 0; j < coords.length; j++) {
|
| 403 | 403 |
if (this.clusterCoords == null) {
|
| ... | ... | |
| 479 | 479 |
if (this.clusterOrderedRowNames == null) {
|
| 480 | 480 |
try {
|
| 481 | 481 |
RWorkspace rw = RWorkspace.getRWorkspaceInstance(); |
| 482 |
REXP sv = rw.extractItemFromListByName(symbol, "call$t$tree$labels[c(" + symbol + "$call$t$tree$order)]"); //$NON-NLS-1$
|
|
| 482 |
REXP sv = rw.extractItemFromListByName(symbol, "call$t$tree$labels[c(" + symbol + "$call$t$tree$order)]"); //$NON-NLS-1$ //$NON-NLS-2$
|
|
| 483 | 483 |
this.clusterOrderedRowNames = sv.asStrings(); |
| 484 | 484 |
} |
| 485 | 485 |
catch (Exception e) {
|
| ... | ... | |
| 671 | 671 |
|
| 672 | 672 |
@Override |
| 673 | 673 |
public String[] getExportTXTExtensions() {
|
| 674 |
return new String[] { "*.txt" };
|
|
| 674 |
return new String[] { "*.txt" }; //$NON-NLS-1$
|
|
| 675 | 675 |
} |
| 676 | 676 |
|
| 677 | 677 |
|
| ... | ... | |
| 712 | 712 |
|
| 713 | 713 |
@Override |
| 714 | 714 |
public String getDetails() {
|
| 715 |
return NLS.bind(this.getName() + "\ncomputed with the {0} method and the {1} metric.", method, metric);
|
|
| 715 |
return NLS.bind(this.getName() + AHCCoreMessages.AHC_computedWithTheP0MethodAndTheP1Metric, method, metric);
|
|
| 716 | 716 |
} |
| 717 | 717 |
|
| 718 | 718 |
@Override |
| ... | ... | |
| 737 | 737 |
// FIXME: SJ: this special case is possible when creating Specificities then calling the command on the invisible Lexical Table |
| 738 | 738 |
// need to if we need a special log message here |
| 739 | 739 |
else {
|
| 740 |
return ""; |
|
| 740 |
return ""; //$NON-NLS-1$
|
|
| 741 | 741 |
} |
| 742 | 742 |
} |
| 743 | 743 |
|
| TXM/trunk/org.txm.ahc.core/src/org/txm/ahc/core/chartsengine/jfreechart/JFCAHCChartCreator.java (revision 3400) | ||
|---|---|---|
| 19 | 19 |
@Override |
| 20 | 20 |
public JFreeChart createChart(AHC result) {
|
| 21 | 21 |
|
| 22 |
System.err.println("JFCAHCChartCreator.createChart(): not yet implemented.");
|
|
| 22 |
System.err.println("JFCAHCChartCreator.createChart() is not yet implemented."); //$NON-NLS-1$
|
|
| 23 | 23 |
|
| 24 | 24 |
return null; |
| 25 | 25 |
|
| TXM/trunk/org.txm.ahc.core/src/org/txm/ahc/core/chartsengine/r/RAHCChartCreator.java (revision 3400) | ||
|---|---|---|
| 22 | 22 |
String cmd = null; |
| 23 | 23 |
// 2D |
| 24 | 24 |
if (ahc.isRendering2D()) {
|
| 25 |
cmd = "plot.HCPC(" + ahc.getRSymbol() + ", new.plot=FALSE, choice=\"tree\")";
|
|
| 25 |
cmd = "plot.HCPC(" + ahc.getRSymbol() + ", new.plot=FALSE, choice=\"tree\")"; //$NON-NLS-1$ //$NON-NLS-2$
|
|
| 26 | 26 |
|
| 27 | 27 |
// FIXME: SJ: for tests without drawing the inertia barplot. Without it, the max available clusters can exceed 16 |
| 28 | 28 |
// cmd = "plot.HCPC(" + cah.getSymbol() + ", new.plot=FALSE, choice=\"tree\", tree.barplot=FALSE)"; //$NON-NLS-1$ //$NON-NLS-2$
|
| ... | ... | |
| 33 | 33 |
} |
| 34 | 34 |
// 3D |
| 35 | 35 |
else {
|
| 36 |
cmd = "plot.HCPC(" + ahc.getRSymbol() + ", new.plot=FALSE)";
|
|
| 36 |
cmd = "plot.HCPC(" + ahc.getRSymbol() + ", new.plot=FALSE)"; //$NON-NLS-1$ //$NON-NLS-2$
|
|
| 37 | 37 |
} |
| 38 | 38 |
|
| 39 | 39 |
return this.getChartsEngine().plot(file, cmd); |
Formats disponibles : Unified diff