Révision 3342

TXM/trunk/org.txm.ca.core/src/org/txm/ca/core/functions/CA.java (revision 3342)
137 137 
	 * @throws StatException stat exception if the structure can not be created in R statistics engine.
138 138 
	 */
139 139 
	public CA(LexicalTable lexicalTable) {
140
140 141 
		this(null, lexicalTable);
141 142 
	}
142 143
......
147 148 
	 * @throws StatException stat exception if the structure can not be created in R statistics engine.
148 149 
	 */
149 150 
	public CA(String parametersNodePath) {
151
150 152 
		this(parametersNodePath, null);
151 153 
	}
152 154
......
157 159 
	 * @throws StatException stat exception if the structure can not be created in R statistics engine.
158 160 
	 */
159 161 
	public CA(String parametersNodePath, LexicalTable lexicalTable) {
162
160 163 
		super(parametersNodePath, lexicalTable);
161 164
162 165 
		this.needsToSquareOff = true;
......
164 167
165 168 
	@Override
166 169 
	public void clean() {
170
167 171 
		try {
168 172 
			if (this.getCA() != null) {
169 173 
				RWorkspace.getRWorkspaceInstance().removeVariableFromWorkspace(this.getCA().getSymbol());
......
220 224 
	}
221 225
222 226 
	public void displayOptions(String col, String row, float cex) {
227
223 228 
		this.cex = Math.abs(cex);
224 229 
		if (col.matches(pattern)) {
225 230 
			this.colfilter = col;
......
247 252 
	// FIXME: to move in an exporter extension
248 253 
	@Deprecated
249 254 
	public boolean exportColInfos(File file, String encoding, String colseparator, String textseparator) {
255
250 256 
		try {
251 257 
			Writer writer = new OutputStreamWriter(new FileOutputStream(file), encoding);
252 258 
			String[] titles = getColInfosTitles();
......
254 260 
				String title = titles[i];
255 261 
				if (i < titles.length - 1)
256 262 
					writer.write(textseparator + title + textseparator + colseparator);
257 
				else
258 
					writer.write(textseparator + title + textseparator + colseparator);
263 
				else writer.write(textseparator + title + textseparator + colseparator);
259 264 
			}
260 265 
			writer.write("\n"); //$NON-NLS-1$
261 266 
			Object[] infos = getColInfos();
......
288 293 
	// FIXME: to move in an exporter extension
289 294 
	@Deprecated
290 295 
	public void exportRowInfos(File file, String encoding, String colseparator, String textseparator) {
296
291 297 
		try {
292 298 
			Writer writer = new OutputStreamWriter(new FileOutputStream(file), encoding);
293 299 
			String[] titles = getRowInfosTitles();
......
324 330 
	 * @return the ca
325 331 
	 */
326 332 
	public org.txm.ca.core.statsengine.r.functions.ICA getCA() {
333
327 334 
		return r_ca;
328 335 
	}
329 336
330 337 
	public float getCex() {
338
331 339 
		return cex;
332 340 
	}
333 341
......
337 345 
	 * @return the column filter -> only used by FactoMineR
338 346 
	 */
339 347 
	public String getColFilter() {
348
340 349 
		return colfilter;
341 350 
	}
342 351
......
347 356 
	 * @return the col infos titles
348 357 
	 */
349 358 
	public String[] getColInfosTitles() {
359
350 360 
		if (coltitles == null) {
351 361 
			List<String> colnames = new ArrayList<>();
352 362 
			colnames.add(TXMCoreMessages.common_cols); // entry
......
379 389 
	 * @throws StatException the stat exception
380 390 
	 */
381 391 
	public String[] getColNames() throws StatException {
392
382 393 
		if (colnames == null) {
383 394 
			colnames = this.getCA().getColNames().asStringsArray();
384 395 
		}
......
391 402 
	 * @return the columns coordinates
392 403 
	 */
393 404 
	public double[][] getColsCoords() {
405
394 406 
		return this.r_ca.getColsCoords();
395 407 
	}
396 408
......
401 413 
	 * @throws StatException the stat exception
402 414 
	 */
403 415 
	public double[] getColsDist() throws StatException {
416
404 417 
		return this.r_ca.getColDist();
405 418 
	}
406 419
......
411 424 
	 * @throws StatException the stat exception
412 425 
	 */
413 426 
	public double[] getColsInertia() throws StatException {
427
414 428 
		return this.r_ca.getColsInertia();
415 429 
	}
416 430
......
421 435 
	 * @throws StatException the stat exception
422 436 
	 */
423 437 
	public double[] getColsMass() throws StatException {
438
424 439 
		return this.r_ca.getColsMass();
425 440 
	}
426 441
......
432 447 
	 * @throws RWorkspaceException
433 448 
	 */
434 449 
	public int getColumnsCount() throws RWorkspaceException, REXPMismatchException {
450
435 451 
		return this.r_ca.getColumnsCount();
436 452 
	}
437 453
438 454
439 455 
	@Override
440 456 
	public String[] getExportTXTExtensions() {
457
441 458 
		return new String[] { "*.txt" };
442 459 
	}
443 460
......
447 464 
	 * @return the first dimension
448 465 
	 */
449 466 
	public int getFirstDimension() {
467
450 468 
		return firstDimension;
451 469 
	}
452 470
......
456 474 
	 * @return the lexical table
457 475 
	 */
458 476 
	public LexicalTable getLexicalTable() {
477
459 478 
		return (LexicalTable) this.parent;
460 479 
	}
461 480
......
466 485 
	 * @throws StatException
467 486 
	 */
468 487 
	public double[][] getRowContrib() throws StatException {
488
469 489 
		return r_ca.getRowContrib();
470 490 
	}
471 491
......
476 496 
	 * @throws StatException
477 497 
	 */
478 498 
	public double[][] getRowCos2() throws StatException {
499
479 500 
		return r_ca.getRowCos2();
480 501 
	}
481 502
482 503 
	public String getRowFilter() {
504
483 505 
		return rowfilter;
484 506 
	}
485 507
......
633 655 
	 * @return the row infos titles
634 656 
	 */
635 657 
	public String[] getRowInfosTitles() {
658
636 659 
		if (rowtitles == null) {
637 660 
			List<String> colnames = new ArrayList<>();
638 661 
			colnames.add(TXMCoreMessages.common_rows); // entry
......
665 688 
	 * @throws StatException the stat exception
666 689 
	 */
667 690 
	public String[] getRowNames() throws Exception {
691
668 692 
		if (rownames == null) {
669 693 
			rownames = this.getLexicalTable().getRowNames().asStringsArray();
670 694 
		}
......
677 701 
	 * @return the rows coords
678 702 
	 */
679 703 
	public double[][] getRowsCoords() {
704
680 705 
		return this.r_ca.getRowsCoords();
681 706 
	}
682 707
......
688 713 
	 * @throws RWorkspaceException
689 714 
	 */
690 715 
	public int getRowsCount() throws RWorkspaceException, REXPMismatchException {
716
691 717 
		return this.r_ca.getRowsCount();
692 718 
	}
693 719
......
698 724 
	 * @throws StatException the stat exception
699 725 
	 */
700 726 
	public double[] getRowsDist() throws StatException {
727
701 728 
		return this.r_ca.getRowDist();
702 729 
	}
703 730
......
708 735 
	 * @throws StatException the stat exception
709 736 
	 */
710 737 
	public double[] getRowsInertia() throws StatException {
738
711 739 
		return this.r_ca.getRowsInertia();
712 740 
	}
713 741
......
718 746 
	 * @throws StatException the stat exception
719 747 
	 */
720 748 
	public double[] getRowsMass() throws StatException {
749
721 750 
		return this.r_ca.getRowsMass();
722 751 
	}
723 752
......
761 790 
	 * @return the second dimension
762 791 
	 */
763 792 
	public int getSecondDimension() {
793
764 794 
		return secondDimension;
765 795 
	}
766 796
767 797 
	@Override
768 798 
	public String getSimpleName() {
799
769 800 
		try {
770 801 
			return this.getParent().getProperty().asString() + " (" + this.firstDimension + "," + this.secondDimension + ")"; //$NON-NLS-1$ //$NON-NLS-2$ //$NON-NLS-3$
771 802 
		}
......
776 807
777 808 
	@Override
778 809 
	public String getName() {
810
779 811 
		return this.getParent().getName() + TXMPreferences.PARENT_NAME_SEPARATOR + " (" + this.firstDimension + "," + this.secondDimension + ")"; //$NON-NLS-1$ //$NON-NLS-2$ //$NON-NLS-3$ ;
780 812 
	}
781 813
782 814
783 815 
	@Override
784 816 
	public String getDetails() {
817
785 818 
		try {
786 819 
			return this.getSimpleName() + " " + NLS.bind(TXMCoreMessages.common_fMinEquals, this.getLexicalTable().getFMin());
787 820 
		}
......
793 826
794 827 
	@Override
795 828 
	public String getComputingStartMessage() {
829
796 830 
		// from lexical table
797 831 
		if (this.parent.isVisible()) {
798 832 
			return TXMCoreMessages.bind(CACoreMessages.info_caOfTheP0LexcialTable, this.getParent().getName());
......
825 859 
	 * @throws REXPMismatchException
826 860 
	 */
827 861 
	public double[] getSingularValues() throws StatException, REXPMismatchException {
862
828 863 
		return r_ca.getSingularValues();
829 864 
	}
830 865
......
835 870 
	 * @throws REXPMismatchException
836 871 
	 */
837 872 
	public List<List<Object>> getSingularValuesInfos() throws REXPMismatchException {
873
838 874 
		List<List<Object>> svtabledata = new ArrayList<>();
839 875
840 876 
		double[] sv = null;
......
879 915
880 916 
	@Override
881 917 
	public String getRSymbol() {
918
882 919 
		return r_ca.getSymbol();
883 920 
	}
884 921
......
890 927 
	 * @throws REXPMismatchException
891 928 
	 */
892 929 
	public double[] getValeursPropres() throws StatException, REXPMismatchException {
930
893 931 
		return r_ca.getEigenvalues();
894 932 
	}
895 933
......
901 939 
	 * @throws REXPMismatchException
902 940 
	 */
903 941 
	public double getValeursPropresSum() throws StatException, REXPMismatchException {
942
904 943 
		double sum = 0;
905 944 
		for (double d : getValeursPropres()) {
906 945 
			sum += d;
......
915 954 
	 * @param outfile the outfile
916 955 
	 * @param encoding the encoding
917 956 
	 * @return true, if successful
918 
	 * @throws Exception
957 
	 * @throws Exception
919 958 
	 */
920 959 
	// FIXME: to move in an exporter extension
921 960 
	@Deprecated
922 961 
	public boolean toTxt(File outfile, String encoding) throws Exception {
962
923 963 
		return toTxt(outfile, encoding, "\t", ""); //$NON-NLS-1$ //$NON-NLS-2$
924 964 
	}
925 965
......
936 976 
	// FIXME: to move in an exporter extension
937 977 
	@Deprecated
938 978 
	public boolean _toTxt(File outfile, String encoding, String colseparator, String txtseparator) {
979
939 980 
		acquireSemaphore();
940 981 
		boolean rez = r_ca.toTxt(outfile, encoding, colseparator, txtseparator);
941 982 
		releaseSemaphore();
......
950 991 
	 * @return <code>true</code> if the CA uses the FactoMineR R package otherwise <code>false</code>
951 992 
	 */
952 993 
	public boolean useFactoMineR() {
994
953 995 
		return this.useFactoMineR;
954 996 
	}
955 997
956 998 
	@Override
957 999 
	public boolean canCompute() {
1000
958 1001 
		try {
959 1002 
			return this.getLexicalTable().getNColumns() > 3
960 1003 
					&& this.firstDimension > 0
......
970 1013
971 1014 
	@Override
972 1015 
	public boolean saveParameters() {
1016
973 1017 
		// nothing to do
974 1018 
		return true;
975 1019 
	}
976 1020
977 1021 
	@Override
978 1022 
	public boolean setParameters(TXMParameters parameters) {
1023
979 1024 
		// TODO Auto-generated method stub
980 1025 
		System.err.println("CA.setParameters(): not yet implemented.");
981 1026 
		return true;
......
983 1028
984 1029 
	@Override
985 1030 
	public boolean loadParameters() {
1031
986 1032 
		// nothing to do
987 1033 
		return true;
988 1034 
	}
......
991 1037 
	 * @return the showIndividuals
992 1038 
	 */
993 1039 
	public boolean isShowIndividuals() {
1040
994 1041 
		return showIndividuals;
995 1042 
	}
996 1043
......
998 1045 
	 * @param showIndividuals the showIndividuals to set
999 1046 
	 */
1000 1047 
	public void setShowIndividuals(boolean showIndividuals) {
1048
1001 1049 
		this.showIndividuals = showIndividuals;
1002 1050 
	}
1003 1051
......
1005 1053 
	 * @return the showVariables
1006 1054 
	 */
1007 1055 
	public boolean isShowVariables() {
1056
1008 1057 
		return showVariables;
1009 1058 
	}
1010 1059
......
1012 1061 
	 * @param showVariables the showVariables to set
1013 1062 
	 */
1014 1063 
	public void setShowVariables(boolean showVariables) {
1064
1015 1065 
		this.showVariables = showVariables;
1016 1066 
	}
1017 1067
......
1019 1069 
	 * @return the showPointShapes
1020 1070 
	 */
1021 1071 
	public boolean isShowPointShapes() {
1072
1022 1073 
		return showPointShapes;
1023 1074 
	}
1024 1075
......
1026 1077 
	 * @param showPointShapes the showPointShapes to set
1027 1078 
	 */
1028 1079 
	public void setShowPointShapes(boolean showPointShapes) {
1080
1029 1081 
		this.showPointShapes = showPointShapes;
1030 1082 
	}
1031 1083
......
1033 1085 
	 * @param firstDimension the firstDimension to set
1034 1086 
	 */
1035 1087 
	public void setFirstDimension(int firstDimension) {
1088
1036 1089 
		this.firstDimension = firstDimension;
1037 1090 
	}
1038 1091
......
1040 1093 
	 * @param secondDimension the secondDimension to set
1041 1094 
	 */
1042 1095 
	public void setSecondDimension(int secondDimension) {
1096
1043 1097 
		this.secondDimension = secondDimension;
1044 1098 
	}
1045 1099
1046 1100 
	@Override
1047 1101 
	public String getResultType() {
1102
1048 1103 
		return CACoreMessages.RESULT_TYPE;
1049 1104 
	}
1050 1105
......
1055 1110 
	 * @return the unitProperty
1056 1111 
	 */
1057 1112 
	public Property getUnitProperty() {
1113
1058 1114 
		return this.getLexicalTable().getProperty();
1059 1115 
	}
1060 1116
1061 1117
1062 1118 
	@Override
1063 1119 
	public LexicalTable getParent() {
1120
1064 1121 
		return (LexicalTable) this.parent;
1065 1122 
	}
1066 1123

Formats disponibles : Unified diff