Révision 2596
| tmp/org.txm.ahc.core/src/org/txm/ahc/core/functions/AHC.java (revision 2596) | ||
|---|---|---|
| 42 | 42 |
import org.txm.core.results.TXMParameters; |
| 43 | 43 |
import org.txm.lexicaltable.core.functions.LexicalTable; |
| 44 | 44 |
import org.txm.searchengine.cqp.corpus.Property; |
| 45 |
import org.txm.statsengine.r.core.RResult; |
|
| 45 | 46 |
import org.txm.statsengine.r.core.RWorkspace; |
| 46 | 47 |
import org.txm.statsengine.r.core.exceptions.RWorkspaceException; |
| 47 | 48 |
import org.txm.utils.logger.Log; |
| ... | ... | |
| 53 | 54 |
* @author sjacquot |
| 54 | 55 |
* |
| 55 | 56 |
*/ |
| 56 |
public class AHC extends ChartResult {
|
|
| 57 |
public class AHC extends ChartResult implements RResult {
|
|
| 57 | 58 |
|
| 58 | 59 |
/** |
| 59 | 60 |
* The R name prefix. |
| ... | ... | |
| 193 | 194 |
try {
|
| 194 | 195 |
CA ca = getParent(); |
| 195 | 196 |
LexicalTable table = ca.getLexicalTable(); |
| 196 |
this.target = ca.getSymbol(); |
|
| 197 |
this.target = ca.getRSymbol();
|
|
| 197 | 198 |
|
| 198 | 199 |
// reset the number of clusters to default if columns or rows computing has changed |
| 199 | 200 |
// if(this.hasParameterChanged(AHCPreferences.COLUMNS_COMPUTING)) {
|
| ... | ... | |
| 304 | 305 |
this.clusterMerges = null; |
| 305 | 306 |
} |
| 306 | 307 |
|
| 307 |
/** |
|
| 308 |
* Gets the symbol. |
|
| 309 |
* |
|
| 310 |
* @return the symbol |
|
| 311 |
*/ |
|
| 312 |
public String getSymbol() {
|
|
| 308 |
@Override |
|
| 309 |
public String getRSymbol() {
|
|
| 313 | 310 |
return symbol; |
| 314 | 311 |
} |
| 315 | 312 |
|
| tmp/org.txm.ahc.core/src/org/txm/ahc/core/chartsengine/r/RAHCChartCreator.java (revision 2596) | ||
|---|---|---|
| 24 | 24 |
String cmd = null; |
| 25 | 25 |
// 2D |
| 26 | 26 |
if (ahc.isRendering2D()) {
|
| 27 |
cmd = "plot.HCPC(" + ahc.getSymbol() + ", new.plot=FALSE, choice=\"tree\")";
|
|
| 27 |
cmd = "plot.HCPC(" + ahc.getRSymbol() + ", new.plot=FALSE, choice=\"tree\")";
|
|
| 28 | 28 |
|
| 29 | 29 |
// FIXME: SJ: for tests without drawing the inertia barplot. Without it, the max available clusters can exceed 16 |
| 30 | 30 |
// cmd = "plot.HCPC(" + cah.getSymbol() + ", new.plot=FALSE, choice=\"tree\", tree.barplot=FALSE)"; //$NON-NLS-1$ //$NON-NLS-2$
|
| ... | ... | |
| 35 | 35 |
} |
| 36 | 36 |
// 3D |
| 37 | 37 |
else {
|
| 38 |
cmd = "plot.HCPC(" + ahc.getSymbol() + ", new.plot=FALSE)";
|
|
| 38 |
cmd = "plot.HCPC(" + ahc.getRSymbol() + ", new.plot=FALSE)";
|
|
| 39 | 39 |
} |
| 40 | 40 |
|
| 41 | 41 |
return this.getChartsEngine().plot(file, cmd); |
| tmp/org.txm.specificities.core/src/org/txm/specificities/core/functions/Specificities.java (revision 2596) | ||
|---|---|---|
| 50 | 50 |
import org.txm.searchengine.cqp.corpus.Partition; |
| 51 | 51 |
import org.txm.searchengine.cqp.corpus.Property; |
| 52 | 52 |
import org.txm.searchengine.cqp.corpus.WordProperty; |
| 53 |
import org.txm.specificities.core.chartsengine.r.RSpecificitiesBarChartCreator; |
|
| 53 | 54 |
import org.txm.specificities.core.messages.SpecificitiesCoreMessages; |
| 54 | 55 |
import org.txm.specificities.core.preferences.SpecificitiesPreferences; |
| 55 | 56 |
import org.txm.specificities.core.statsengine.r.function.SpecificitiesR; |
| ... | ... | |
| 57 | 58 |
import org.txm.statsengine.core.data.Vector; |
| 58 | 59 |
import org.txm.statsengine.core.utils.ArrayIndex; |
| 59 | 60 |
import org.txm.statsengine.core.utils.CheckArray; |
| 61 |
import org.txm.statsengine.r.core.RResult; |
|
| 60 | 62 |
import org.txm.statsengine.r.core.RWorkspace; |
| 61 | 63 |
import org.txm.statsengine.r.core.exceptions.RWorkspaceException; |
| 62 | 64 |
import org.txm.utils.logger.Log; |
| ... | ... | |
| 64 | 66 |
/** |
| 65 | 67 |
* Compute specificities indexes using a {@link LexicalTable}
|
| 66 | 68 |
* |
| 67 |
* for alternative and test usages, the Specificities.computeIndex(...) method can be used. |
|
| 69 |
* for alternative and test usages, the Specificities.computeIndex(...) method |
|
| 70 |
* can be used. |
|
| 68 | 71 |
* |
| 69 | 72 |
* @author mdecorde |
| 70 | 73 |
* @author sloiseau |
| 71 | 74 |
* |
| 72 | 75 |
*/ |
| 73 |
public class Specificities extends TXMResult {
|
|
| 74 |
|
|
| 76 |
public class Specificities extends TXMResult implements RResult {
|
|
| 77 |
|
|
| 75 | 78 |
public static int MAXSPECIF = 1000; |
| 76 |
|
|
| 79 |
|
|
| 77 | 80 |
/** The indices. */ |
| 78 | 81 |
private double[][] indices; |
| 79 |
|
|
| 82 |
|
|
| 80 | 83 |
/** The rowindex. */ |
| 81 | 84 |
private int[] rowindex = null; |
| 82 |
|
|
| 85 |
|
|
| 83 | 86 |
/** The colindex. */ |
| 84 | 87 |
private int[] colindex = null; |
| 85 |
|
|
| 88 |
|
|
| 86 | 89 |
/** The frequencies. */ |
| 87 | 90 |
private int[][] frequencies = null; |
| 88 |
|
|
| 91 |
|
|
| 89 | 92 |
/** The colnames. */ |
| 90 | 93 |
private List<String> colnames = null; |
| 91 |
|
|
| 94 |
|
|
| 92 | 95 |
/** The rownames. */ |
| 93 | 96 |
private List<String> rownames = null; |
| 94 |
|
|
| 97 |
|
|
| 95 | 98 |
/** The symbol. */ |
| 96 | 99 |
private String symbol; |
| 97 |
|
|
| 100 |
|
|
| 98 | 101 |
/** The writer. */ |
| 99 | 102 |
@Deprecated |
| 100 | 103 |
private BufferedWriter writer; |
| 101 |
|
|
| 102 |
/** The table. contains **all** the corpus data necessary to compute the Specificities */ |
|
| 104 |
|
|
| 105 |
/** |
|
| 106 |
* The table. contains **all** the corpus data necessary to compute the |
|
| 107 |
* Specificities |
|
| 108 |
*/ |
|
| 103 | 109 |
private LexicalTable lexicalTable; |
| 104 |
|
|
| 110 |
|
|
| 105 | 111 |
/** |
| 106 | 112 |
* Maximum score. |
| 107 | 113 |
*/ |
| 108 | 114 |
@Parameter(key = SpecificitiesPreferences.MAX_SCORE) |
| 109 | 115 |
protected int maxScore; |
| 110 |
|
|
| 111 |
|
|
| 116 |
|
|
| 112 | 117 |
/** |
| 113 | 118 |
* Creates a not computed Specificities. |
| 114 | 119 |
* |
| ... | ... | |
| 117 | 122 |
public Specificities(LexicalTable parent) {
|
| 118 | 123 |
super(parent); |
| 119 | 124 |
} |
| 120 |
|
|
| 125 |
|
|
| 121 | 126 |
/** |
| 122 | 127 |
* Creates a not computed Specificities. |
| 123 | 128 |
* |
| ... | ... | |
| 126 | 131 |
public Specificities(String parametersNodePath) {
|
| 127 | 132 |
this(parametersNodePath, null); |
| 128 | 133 |
} |
| 129 |
|
|
| 134 |
|
|
| 130 | 135 |
/** |
| 131 | 136 |
* Creates a not computed Specificities. |
| 132 | 137 |
* |
| 133 | 138 |
* @param parent the table |
| 134 | 139 |
* @return the specificities result |
| 135 | 140 |
* @throws CqiClientException the cqi client exception |
| 136 |
* @throws StatException the stat exception |
|
| 141 |
* @throws StatException the stat exception
|
|
| 137 | 142 |
*/ |
| 138 | 143 |
public Specificities(String parametersNodePath, LexicalTable parent) {
|
| 139 | 144 |
super(parametersNodePath, parent); |
| 140 | 145 |
} |
| 141 |
|
|
| 146 |
|
|
| 142 | 147 |
@Override |
| 143 | 148 |
public boolean loadParameters() {
|
| 144 | 149 |
this.lexicalTable = (LexicalTable) this.parent; |
| 145 | 150 |
return true; |
| 146 | 151 |
} |
| 147 |
|
|
| 152 |
|
|
| 148 | 153 |
@Override |
| 149 | 154 |
public boolean saveParameters() {
|
| 150 | 155 |
// nothing to do |
| 151 | 156 |
return true; |
| 152 | 157 |
} |
| 153 |
|
|
| 154 |
|
|
| 155 |
|
|
| 158 |
|
|
| 156 | 159 |
@Override |
| 157 | 160 |
protected boolean _compute() throws Exception {
|
| 158 |
|
|
| 161 |
|
|
| 159 | 162 |
this.frequencies = null; |
| 160 |
|
|
| 161 |
// delete the specificities selection chart children since they can not be valid anymore if the unit property has changed |
|
| 163 |
|
|
| 164 |
// delete the specificities selection chart children since they can not be valid |
|
| 165 |
// anymore if the unit property has changed |
|
| 162 | 166 |
// FIXME: doesn't work |
| 163 | 167 |
if (this.lexicalTable.hasParameterChanged(TBXPreferences.UNIT_PROPERTY)) {
|
| 164 | 168 |
this.deleteChildren(SpecificitiesSelection.class); |
| 165 | 169 |
} |
| 166 |
|
|
| 170 |
|
|
| 167 | 171 |
ILexicalTable data = this.lexicalTable.getData(); |
| 168 | 172 |
SpecificitiesR rSpecificities = new SpecificitiesR(data); |
| 169 | 173 |
double[][] specIndex = rSpecificities.getScores(); |
| 170 |
|
|
| 174 |
|
|
| 171 | 175 |
// TODO if test no more necessary ? only if lexicalTable symb |
| 172 | 176 |
// if (this.lexicalTable.getPartition() != null) {
|
| 173 | 177 |
// init(symbol, specIndex); |
| 174 | 178 |
// } |
| 175 | 179 |
// else {
|
| 176 | 180 |
init(rSpecificities.getSymbol(), specIndex); |
| 181 |
this.symbol = rSpecificities.getSymbol(); |
|
| 177 | 182 |
// } |
| 178 | 183 |
// } |
| 179 |
|
|
| 184 |
|
|
| 180 | 185 |
return true; |
| 181 | 186 |
} |
| 182 |
|
|
| 187 |
|
|
| 183 | 188 |
/** |
| 184 | 189 |
* Instantiates a new specificities result. |
| 185 | 190 |
* |
| 186 |
* @param symbol the symbol |
|
| 191 |
* @param symbol the symbol
|
|
| 187 | 192 |
* @param specIndex the spec index (as double[row][column]) |
| 188 |
* @param table the table |
|
| 189 |
* @param typeFocus names of the rows of the lexical table with corresponding rows
|
|
| 190 |
* in the specIndex array; <code>null</code> if all the rows are
|
|
| 191 |
* represented in specIndex. |
|
| 192 |
* @param partFocus names of the cols of the lexical table with corresponding cols
|
|
| 193 |
* in the specIndex array; <code>null</code> if all the cols are
|
|
| 194 |
* represented in specIndex. |
|
| 195 |
* @param name the name |
|
| 196 |
* @param maxScore if abs(score) > maxScore -> score = +/- maxScore |
|
| 193 |
* @param table the table
|
|
| 194 |
* @param typeFocus names of the rows of the lexical table with corresponding |
|
| 195 |
* rows in the specIndex array; <code>null</code> if all the
|
|
| 196 |
* rows are represented in specIndex.
|
|
| 197 |
* @param partFocus names of the cols of the lexical table with corresponding |
|
| 198 |
* cols in the specIndex array; <code>null</code> if all the
|
|
| 199 |
* cols are represented in specIndex.
|
|
| 200 |
* @param name the name
|
|
| 201 |
* @param maxScore if abs(score) > maxScore -> score = +/- maxScore
|
|
| 197 | 202 |
* @throws StatException the stat exception |
| 198 | 203 |
*/ |
| 199 | 204 |
protected void init(String symbol, double[][] specIndex) throws Exception {
|
| 200 |
|
|
| 205 |
|
|
| 201 | 206 |
if (this.symbol != null && this.symbol.equals(symbol)) {
|
| 202 | 207 |
try {
|
| 203 | 208 |
RWorkspace.getRWorkspaceInstance().removeVariableFromWorkspace(this.symbol); |
| 204 |
} |
|
| 205 |
catch (RWorkspaceException e) {
|
|
| 209 |
} catch (RWorkspaceException e) {
|
|
| 206 | 210 |
e.printStackTrace(); |
| 207 | 211 |
} |
| 208 | 212 |
} |
| 209 | 213 |
this.symbol = symbol; |
| 210 |
|
|
| 214 |
|
|
| 211 | 215 |
if (this.lexicalTable == null) {
|
| 212 | 216 |
throw new IllegalArgumentException(SpecificitiesCoreMessages.theLexicalTableCannotBeNull); |
| 213 | 217 |
} |
| 214 | 218 |
// this.name = name; |
| 215 |
|
|
| 219 |
|
|
| 216 | 220 |
if (specIndex == null || specIndex.length == 0) {
|
| 217 | 221 |
throw new IllegalArgumentException(SpecificitiesCoreMessages.noSpecificitiesIndexArray); |
| 218 | 222 |
} |
| 219 | 223 |
boolean ok = CheckArray.checkMatrixRepresentation(specIndex); |
| 220 | 224 |
if (!ok) {
|
| 221 |
throw new IllegalArgumentException(SpecificitiesCoreMessages.theSpecificityIndexArrayDoesNotProperlyRepresentAMatrix); |
|
| 225 |
throw new IllegalArgumentException( |
|
| 226 |
SpecificitiesCoreMessages.theSpecificityIndexArrayDoesNotProperlyRepresentAMatrix); |
|
| 222 | 227 |
} |
| 223 |
|
|
| 228 |
|
|
| 224 | 229 |
this.indices = specIndex; |
| 225 | 230 |
this.colnames = Arrays.asList(lexicalTable.getColNames().asStringsArray()); |
| 226 | 231 |
this.rownames = Arrays.asList(lexicalTable.getRowNames().asStringsArray()); |
| 227 |
|
|
| 232 |
|
|
| 228 | 233 |
// filter by max&min |
| 229 | 234 |
int MAX = MAXSPECIF; |
| 230 | 235 |
int MIN = -MAXSPECIF; |
| 231 |
|
|
| 236 |
|
|
| 232 | 237 |
if (maxScore > 0) {
|
| 233 | 238 |
MAX = maxScore; |
| 234 | 239 |
MIN = -maxScore; |
| 235 | 240 |
} |
| 236 |
|
|
| 241 |
|
|
| 237 | 242 |
for (int i = 0; i < indices.length; i++) {
|
| 238 | 243 |
for (int j = 0; j < indices[i].length; j++) {
|
| 239 | 244 |
if (indices[i][j] > MAX) {
|
| 240 | 245 |
indices[i][j] = MAX; |
| 241 |
} |
|
| 242 |
else if (indices[i][j] < MIN) {
|
|
| 246 |
} else if (indices[i][j] < MIN) {
|
|
| 243 | 247 |
indices[i][j] = MIN; |
| 244 | 248 |
} |
| 245 | 249 |
} |
| 246 | 250 |
} |
| 247 |
|
|
| 251 |
|
|
| 248 | 252 |
if (this.rownames != null && this.rownames.size() != 0) {
|
| 249 | 253 |
if (this.rownames.size() != specIndex.length) {
|
| 250 | 254 |
throw new IllegalArgumentException( |
| 251 |
SpecificitiesCoreMessages.bind(SpecificitiesCoreMessages.numberOfRowsWantedP0AndFoundP1Mismatch, this.rownames.size(), specIndex.length)); |
|
| 255 |
SpecificitiesCoreMessages.bind(SpecificitiesCoreMessages.numberOfRowsWantedP0AndFoundP1Mismatch, |
|
| 256 |
this.rownames.size(), specIndex.length)); |
|
| 252 | 257 |
} |
| 253 |
|
|
| 254 |
rowindex = ArrayIndex.getIndex(this.lexicalTable.getRowNames().asStringsArray(), this.rownames.toArray(new String[] {}));
|
|
| 258 |
|
|
| 259 |
rowindex = ArrayIndex.getIndex(this.lexicalTable.getRowNames().asStringsArray(), |
|
| 260 |
this.rownames.toArray(new String[] {}));
|
|
| 255 | 261 |
for (int i : rowindex) {
|
| 256 | 262 |
if (i == -1) {
|
| 257 | 263 |
throw new IllegalArgumentException(SpecificitiesCoreMessages.referenceToNonExistingRow); |
| ... | ... | |
| 275 | 281 |
// } |
| 276 | 282 |
// } |
| 277 | 283 |
} |
| 278 |
|
|
| 279 |
|
|
| 284 |
|
|
| 280 | 285 |
/** |
| 281 | 286 |
* Utility method to compute the specificity index of a word in a subcorpus. |
| 282 | 287 |
* <br> |
| ... | ... | |
| 297 | 302 |
public static double computeIndex(int f, int F, int t, int T) throws Exception {
|
| 298 | 303 |
RWorkspace rw = RWorkspace.getRWorkspaceInstance(); |
| 299 | 304 |
rw.voidEval("library(textometry)");
|
| 300 |
REXP rez = rw.eval("specificities(matrix(c(" + f + ", " + (t - f) + ", " + (F - f) + ", " + (T - t - F + f) + "), ncol=2))");
|
|
| 305 |
REXP rez = rw.eval("specificities(matrix(c(" + f + ", " + (t - f) + ", " + (F - f) + ", " + (T - t - F + f)
|
|
| 306 |
+ "), ncol=2))"); |
|
| 301 | 307 |
if (rez != null) {
|
| 302 | 308 |
return rez.asDoubles()[0]; |
| 303 | 309 |
} |
| 304 | 310 |
return 0.0d; |
| 305 | 311 |
} |
| 306 |
|
|
| 307 |
|
|
| 312 |
|
|
| 308 | 313 |
/** |
| 309 | 314 |
* Sets the unit property. |
| 310 | 315 |
* |
| ... | ... | |
| 313 | 318 |
public void setUnitProperty(WordProperty unitProperty) {
|
| 314 | 319 |
this.getLexicalTable().setUnitProperty(unitProperty); |
| 315 | 320 |
} |
| 316 |
|
|
| 321 |
|
|
| 317 | 322 |
/** |
| 318 | 323 |
* Gets the type focus. |
| 319 | 324 |
* |
| ... | ... | |
| 322 | 327 |
public List<String> getTypeFocus() {
|
| 323 | 328 |
return rownames; |
| 324 | 329 |
} |
| 325 |
|
|
| 330 |
|
|
| 326 | 331 |
/** |
| 327 | 332 |
* Gets the part focus. |
| 328 | 333 |
* |
| ... | ... | |
| 331 | 336 |
public List<String> getPartFocus() {
|
| 332 | 337 |
return colnames; |
| 333 | 338 |
} |
| 334 |
|
|
| 339 |
|
|
| 335 | 340 |
/** |
| 336 | 341 |
* Gets the number of columns of the lexical table. |
| 337 | 342 |
* |
| ... | ... | |
| 342 | 347 |
if (lexicalTable != null) {
|
| 343 | 348 |
try {
|
| 344 | 349 |
return lexicalTable.getNColumns(); |
| 345 |
} |
|
| 346 |
catch (Exception e) {
|
|
| 350 |
} catch (Exception e) {
|
|
| 347 | 351 |
// TODO Auto-generated catch block |
| 348 | 352 |
e.printStackTrace(); |
| 349 | 353 |
return 0; |
| 350 | 354 |
} |
| 351 |
} |
|
| 352 |
else {
|
|
| 355 |
} else {
|
|
| 353 | 356 |
return getColumnsNames().length; |
| 354 | 357 |
} |
| 355 | 358 |
} |
| 356 |
|
|
| 359 |
|
|
| 357 | 360 |
/** |
| 358 | 361 |
* Gets the sum of all the columns frequencies. |
| 359 | 362 |
* |
| ... | ... | |
| 363 | 366 |
public int getFrequenciesSum() throws StatException {
|
| 364 | 367 |
if (lexicalTable.getData() != null) {
|
| 365 | 368 |
return lexicalTable.getData().getTotal(); |
| 366 |
} |
|
| 367 |
else {
|
|
| 369 |
} else {
|
|
| 368 | 370 |
return 0; |
| 369 | 371 |
} |
| 370 | 372 |
} |
| 371 |
|
|
| 373 |
|
|
| 372 | 374 |
/** |
| 373 | 375 |
* Gets the sums of each columns frequencies. |
| 374 | 376 |
* |
| 375 | 377 |
* @return the sums of each columns frequencies |
| 376 |
* @throws StatException the stat exception |
|
| 378 |
* @throws StatException the stat exception
|
|
| 377 | 379 |
* @throws CqiClientException |
| 378 | 380 |
*/ |
| 379 | 381 |
public int[] getColumnsFrequenciesSums() throws StatException, CqiClientException {
|
| 380 |
|
|
| 382 |
|
|
| 381 | 383 |
if ( |
| 382 | 384 |
// this.lexicalTable != null && |
| 383 | 385 |
this.lexicalTable.hasBeenComputedOnce()) {
|
| ... | ... | |
| 386 | 388 |
colsSizes = colsSizes.get(colindex); |
| 387 | 389 |
} |
| 388 | 390 |
return colsSizes.asIntArray(); |
| 389 |
} |
|
| 390 |
else if (this.lexicalTable.getPartition() != null) {
|
|
| 391 |
} else if (this.lexicalTable.getPartition() != null) {
|
|
| 391 | 392 |
return this.lexicalTable.getPartition().getPartSizes(); |
| 392 |
} |
|
| 393 |
else {
|
|
| 393 |
} else {
|
|
| 394 | 394 |
return new int[] { 0, 0 };
|
| 395 | 395 |
} |
| 396 | 396 |
// if (lexicalTable != null && this.subCorpus == null |
| ... | ... | |
| 409 | 409 |
// } |
| 410 | 410 |
// else {
|
| 411 | 411 |
// try {
|
| 412 |
// return new int[] { subLexicon.nbrOfToken(), lexicon.nbrOfToken() - subLexicon.nbrOfToken() };
|
|
| 412 |
// return new int[] { subLexicon.nbrOfToken(), lexicon.nbrOfToken() -
|
|
| 413 |
// subLexicon.nbrOfToken() }; |
|
| 413 | 414 |
// } |
| 414 | 415 |
// // case of Subcorpus specificities (the lexicons has not yet been computed) |
| 415 | 416 |
// catch (Exception e) {
|
| ... | ... | |
| 417 | 418 |
// } |
| 418 | 419 |
// } |
| 419 | 420 |
} |
| 420 |
|
|
| 421 |
|
|
| 421 | 422 |
@Override |
| 422 | 423 |
public LexicalTable getParent() {
|
| 423 | 424 |
return (LexicalTable) this.parent; |
| 424 | 425 |
} |
| 425 |
|
|
| 426 |
|
|
| 426 | 427 |
/** |
| 427 | 428 |
* Gets the specificities index. |
| 428 | 429 |
* |
| ... | ... | |
| 431 | 432 |
public double[][] getSpecificitesIndex() {
|
| 432 | 433 |
return indices; |
| 433 | 434 |
} |
| 434 |
|
|
| 435 |
|
|
| 435 | 436 |
/** |
| 436 | 437 |
* Name of the type for which specificities are computed. |
| 437 | 438 |
* |
| ... | ... | |
| 441 | 442 |
public String[] getTypeNames() throws Exception {
|
| 442 | 443 |
return lexicalTable.getRowNames().asStringsArray(); |
| 443 | 444 |
} |
| 444 |
|
|
| 445 |
|
|
| 445 | 446 |
/** |
| 446 | 447 |
* Gets the names of the lexical table columns. |
| 447 | 448 |
* |
| ... | ... | |
| 451 | 452 |
public String[] getColumnsNames() throws StatException {
|
| 452 | 453 |
return lexicalTable.getColNames().asStringsArray(); |
| 453 | 454 |
} |
| 454 |
|
|
| 455 |
|
|
| 455 | 456 |
/** |
| 456 | 457 |
* Gets the frequencies of all columns. |
| 457 | 458 |
* |
| ... | ... | |
| 465 | 466 |
// if (lexicalTable != null) {
|
| 466 | 467 |
// System.out.println("FROM TABLE");
|
| 467 | 468 |
frequencies = RWorkspace.getRWorkspaceInstance().evalToInt2D(lexicalTable.getData().getSymbol()); |
| 468 |
|
|
| 469 |
|
|
| 469 | 470 |
// } |
| 470 | 471 |
// else {// if table == null : subcorpus specif
|
| 471 | 472 |
// //System.out.println("FROM LEXICON");
|
| 472 |
// frequencies = new int[lexicon.getFreq().length][2]; // build a frequency table from lexicons |
|
| 473 |
// frequencies = new int[lexicon.getFreq().length][2]; // build a frequency |
|
| 474 |
// table from lexicons |
|
| 473 | 475 |
// String[] corpusforms = lexicon.getForms(); // all the forms |
| 474 | 476 |
// String[] subcorpusforms = subLexicon.getForms(); // all the forms |
| 475 | 477 |
// int[] corpusfreq = lexicon.getFreq(); // all the freqs |
| ... | ... | |
| 492 | 494 |
} |
| 493 | 495 |
return frequencies; |
| 494 | 496 |
} |
| 495 |
|
|
| 497 |
|
|
| 496 | 498 |
/** |
| 497 | 499 |
* Gets the lexical table. |
| 498 | 500 |
* |
| ... | ... | |
| 501 | 503 |
public LexicalTable getLexicalTable() {
|
| 502 | 504 |
return lexicalTable; |
| 503 | 505 |
} |
| 504 |
|
|
| 506 |
|
|
| 505 | 507 |
/** |
| 506 | 508 |
* The frequency in the whole corpus. |
| 507 | 509 |
* |
| ... | ... | |
| 516 | 518 |
// } |
| 517 | 519 |
return formFrequencies.asIntArray(); |
| 518 | 520 |
} |
| 519 |
|
|
| 521 |
|
|
| 520 | 522 |
@Override |
| 521 | 523 |
public boolean toTxt(File outfile, String encoding, String colseparator, String txtseparator) throws Exception {
|
| 522 |
|
|
| 523 |
// NK: Declared as class attribute to perform a clean if the operation is interrupted |
|
| 524 |
|
|
| 525 |
// NK: Declared as class attribute to perform a clean if the operation is |
|
| 526 |
// interrupted |
|
| 524 | 527 |
// OutputStreamWriter writer; |
| 525 | 528 |
try {
|
| 526 | 529 |
this.writer = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(outfile), encoding)); |
| 527 |
} |
|
| 528 |
catch (UnsupportedEncodingException e1) {
|
|
| 530 |
} catch (UnsupportedEncodingException e1) {
|
|
| 529 | 531 |
org.txm.utils.logger.Log.printStackTrace(e1); |
| 530 | 532 |
return false; |
| 531 |
} |
|
| 532 |
catch (FileNotFoundException e1) {
|
|
| 533 |
} catch (FileNotFoundException e1) {
|
|
| 533 | 534 |
org.txm.utils.logger.Log.printStackTrace(e1); |
| 534 | 535 |
return false; |
| 535 | 536 |
} |
| 536 |
|
|
| 537 |
|
|
| 537 | 538 |
// int[] T = getPartSize(); |
| 538 | 539 |
acquireSemaphore(); |
| 539 | 540 |
try {
|
| ... | ... | |
| 547 | 548 |
txt += colseparator + "f_" + colname + colseparator + "score_" + colname; //$NON-NLS-1$ //$NON-NLS-2$ |
| 548 | 549 |
} |
| 549 | 550 |
writer.write(txt + "\n"); //$NON-NLS-1$ |
| 550 |
|
|
| 551 |
|
|
| 551 | 552 |
// write data |
| 552 | 553 |
for (int ii = 0; ii < frequencies.length; ii++) {
|
| 553 |
txt = txtseparator + getTypeNames()[ii].replace(txtseparator, txtseparator + txtseparator) + txtseparator; |
|
| 554 |
txt = txtseparator + getTypeNames()[ii].replace(txtseparator, txtseparator + txtseparator) |
|
| 555 |
+ txtseparator; |
|
| 554 | 556 |
int somme = 0; |
| 555 | 557 |
String txtcols = ""; //$NON-NLS-1$ |
| 556 | 558 |
for (int j = 0; j < frequencies[ii].length; j++) {
|
| ... | ... | |
| 562 | 564 |
writer.flush(); |
| 563 | 565 |
} |
| 564 | 566 |
writer.close(); |
| 565 |
} |
|
| 566 |
catch (IOException e) {
|
|
| 567 |
} catch (IOException e) {
|
|
| 567 | 568 |
org.txm.utils.logger.Log.printStackTrace(e); |
| 568 | 569 |
return false; |
| 569 |
} |
|
| 570 |
finally {
|
|
| 570 |
} finally {
|
|
| 571 | 571 |
releaseSemaphore(); |
| 572 | 572 |
} |
| 573 |
|
|
| 573 |
|
|
| 574 | 574 |
return true; |
| 575 | 575 |
} |
| 576 |
|
|
| 576 |
|
|
| 577 | 577 |
@Override |
| 578 | 578 |
public void clean() {
|
| 579 | 579 |
try {
|
| 580 | 580 |
if (symbol != null) {
|
| 581 | 581 |
RWorkspace.getRWorkspaceInstance().removeVariableFromWorkspace(symbol); |
| 582 | 582 |
} |
| 583 |
} |
|
| 584 |
catch (RWorkspaceException e) {
|
|
| 583 |
} catch (RWorkspaceException e) {
|
|
| 585 | 584 |
// TODO Auto-generated catch block |
| 586 | 585 |
e.printStackTrace(); |
| 587 | 586 |
} |
| 588 |
|
|
| 587 |
|
|
| 589 | 588 |
try {
|
| 590 | 589 |
if (this.writer != null) {
|
| 591 | 590 |
this.writer.flush(); |
| 592 | 591 |
this.writer.close(); |
| 593 | 592 |
} |
| 594 |
} |
|
| 595 |
catch (IOException e) {
|
|
| 593 |
} catch (IOException e) {
|
|
| 596 | 594 |
org.txm.utils.logger.Log.printStackTrace(e); |
| 597 | 595 |
} |
| 598 | 596 |
} |
| 599 |
|
|
| 597 |
|
|
| 598 |
@Override |
|
| 599 |
public String getRSymbol() {
|
|
| 600 |
return this.symbol; |
|
| 601 |
} |
|
| 602 |
|
|
| 600 | 603 |
// /** |
| 601 |
// * Gets the symbol. |
|
| 602 |
// * |
|
| 603 |
// * @return the symbol |
|
| 604 |
// */ |
|
| 605 |
// public String getSymbol() {
|
|
| 606 |
// return symbol; |
|
| 607 |
// } |
|
| 608 |
|
|
| 609 |
// /** |
|
| 610 | 604 |
// * Gets the sorted part indexes. |
| 611 | 605 |
// * |
| 612 | 606 |
// * @return the sorted part indexes |
| ... | ... | |
| 641 | 635 |
// } |
| 642 | 636 |
// return new int[0]; |
| 643 | 637 |
// } |
| 644 |
|
|
| 638 |
|
|
| 645 | 639 |
@Override |
| 646 | 640 |
public String getName() {
|
| 647 | 641 |
// FIXME: to define |
| 648 |
// if (this.specificitiesResult.getLexicalTable()!= null && this.specificitiesResult.getLexicalTable().getPartition() != null) {
|
|
| 649 |
// setPartName(this.specificitiesResult.getLexicalTable().getPartition().getName()+": "+specificitiesResult.getName()); //$NON-NLS-1$ |
|
| 642 |
// if (this.specificitiesResult.getLexicalTable()!= null && |
|
| 643 |
// this.specificitiesResult.getLexicalTable().getPartition() != null) {
|
|
| 644 |
// setPartName(this.specificitiesResult.getLexicalTable().getPartition().getName()+": |
|
| 645 |
// "+specificitiesResult.getName()); //$NON-NLS-1$ |
|
| 650 | 646 |
// } else if (spinput.getSubcorpus() != null) {
|
| 651 |
// setPartName(spinput.getSubcorpus().getName()+": "+specificitiesResult.getName()); //$NON-NLS-1$ |
|
| 647 |
// setPartName(spinput.getSubcorpus().getName()+": |
|
| 648 |
// "+specificitiesResult.getName()); //$NON-NLS-1$ |
|
| 652 | 649 |
// } else {
|
| 653 | 650 |
// setPartName(specificitiesResult.getName()); |
| 654 | 651 |
// } |
| ... | ... | |
| 660 | 657 |
// else {
|
| 661 | 658 |
// return this.lexicalTable.getParent().toString(); |
| 662 | 659 |
// } |
| 663 |
} |
|
| 664 |
catch (Exception e) {
|
|
| 660 |
} catch (Exception e) {
|
|
| 665 | 661 |
return this.getEmptyName(); |
| 666 | 662 |
} |
| 667 | 663 |
} |
| 668 |
|
|
| 669 |
|
|
| 670 |
|
|
| 664 |
|
|
| 671 | 665 |
@Override |
| 672 | 666 |
public String getSimpleName() {
|
| 673 | 667 |
return this.getName(); |
| 674 | 668 |
} |
| 675 |
|
|
| 669 |
|
|
| 676 | 670 |
@Override |
| 677 | 671 |
public String getDetails() {
|
| 678 | 672 |
return NLS.bind(this.getName() + " (max score={0})", this.maxScore);
|
| 679 | 673 |
} |
| 680 |
|
|
| 681 |
|
|
| 674 |
|
|
| 682 | 675 |
@Override |
| 683 | 676 |
public String getComputingStartMessage() {
|
| 684 | 677 |
// from lexical table |
| 685 | 678 |
if (this.parent.isVisible()) {
|
| 686 |
return TXMCoreMessages.bind(SpecificitiesCoreMessages.info_specificitiesOfTheP0LexcialTable, this.getParent().getSimpleName());
|
|
| 687 |
}
|
|
| 688 |
else {
|
|
| 689 |
|
|
| 679 |
return TXMCoreMessages.bind(SpecificitiesCoreMessages.info_specificitiesOfTheP0LexcialTable, |
|
| 680 |
this.getParent().getSimpleName());
|
|
| 681 |
} else {
|
|
| 682 |
|
|
| 690 | 683 |
// from partition |
| 691 | 684 |
if (this.getParent().getPartition() != null) {
|
| 692 |
return TXMCoreMessages.bind(SpecificitiesCoreMessages.info_specificitiesOfTheP0PartitionCommaP1Property, this.getParent().getPartition().getSimpleName(), this.getParent()
|
|
| 693 |
.getProperty()); |
|
| 685 |
return TXMCoreMessages.bind(SpecificitiesCoreMessages.info_specificitiesOfTheP0PartitionCommaP1Property, |
|
| 686 |
this.getParent().getPartition().getSimpleName(), this.getParent().getProperty());
|
|
| 694 | 687 |
} |
| 695 | 688 |
// from sub-corpus lexical table |
| 696 |
// FIXME: SJ: this special case is possible when creating Specificities then calling the command on the invisible Lexical Table |
|
| 689 |
// FIXME: SJ: this special case is possible when creating Specificities then |
|
| 690 |
// calling the command on the invisible Lexical Table |
|
| 697 | 691 |
// need to if we need a special log message here |
| 698 | 692 |
else {
|
| 699 |
return TXMCoreMessages.bind(SpecificitiesCoreMessages.info_specificitiesOfTheP0Corpus, this.getParent().getParent().getSimpleName()); |
|
| 693 |
return TXMCoreMessages.bind(SpecificitiesCoreMessages.info_specificitiesOfTheP0Corpus, |
|
| 694 |
this.getParent().getParent().getSimpleName()); |
|
| 700 | 695 |
} |
| 701 | 696 |
} |
| 702 | 697 |
} |
| 703 |
|
|
| 704 |
|
|
| 698 |
|
|
| 705 | 699 |
@Override |
| 706 | 700 |
public boolean canCompute() {
|
| 707 |
|
|
| 701 |
|
|
| 708 | 702 |
if (this.lexicalTable == null) {
|
| 709 | 703 |
Log.severe("Specificities.canCompute(): can not compute without a lexical table.");
|
| 710 | 704 |
return false; |
| 711 | 705 |
} |
| 712 |
|
|
| 706 |
|
|
| 713 | 707 |
// if (this.lexicalTable.getNColumns() < 2) {
|
| 714 | 708 |
// Log.severe(SpecificitiesCoreMessages.ComputeError_NEED_AT_LEAST_2_PARTS); |
| 715 | 709 |
// return false; |
| 716 | 710 |
// } |
| 717 |
|
|
| 711 |
|
|
| 718 | 712 |
return this.lexicalTable.getProperty() != null; |
| 719 | 713 |
} |
| 720 |
|
|
| 721 |
|
|
| 722 |
|
|
| 723 |
|
|
| 714 |
|
|
| 724 | 715 |
/** |
| 725 | 716 |
* @param maxScore the pMaxScore to set |
| 726 | 717 |
*/ |
| 727 | 718 |
public void setMaxScore(int maxScore) {
|
| 728 | 719 |
this.maxScore = maxScore; |
| 729 | 720 |
} |
| 730 |
|
|
| 721 |
|
|
| 731 | 722 |
@Override |
| 732 | 723 |
public boolean setParameters(TXMParameters parameters) {
|
| 733 | 724 |
// TODO Auto-generated method stub |
| 734 | 725 |
System.err.println("Specificities.setParameters(): not yet implemented.");
|
| 735 | 726 |
return true; |
| 736 | 727 |
} |
| 737 |
|
|
| 738 |
|
|
| 728 |
|
|
| 739 | 729 |
/** |
| 740 | 730 |
* @return the maxScore |
| 741 | 731 |
*/ |
| 742 | 732 |
public int getMaxScore() {
|
| 743 | 733 |
return maxScore; |
| 744 | 734 |
} |
| 745 |
|
|
| 735 |
|
|
| 746 | 736 |
/** |
| 747 | 737 |
* @return the unitProperty |
| 748 | 738 |
*/ |
| 749 | 739 |
public Property getUnitProperty() {
|
| 750 | 740 |
return this.getLexicalTable().getProperty(); |
| 751 | 741 |
} |
| 752 |
|
|
| 742 |
|
|
| 753 | 743 |
@Override |
| 754 | 744 |
public String getResultType() {
|
| 755 | 745 |
return SpecificitiesCoreMessages.RESULT_TYPE; |
| tmp/org.txm.statsengine.r.rcp/src/org/txm/rcp/commands/R/CopySelection.java (revision 2596) | ||
|---|---|---|
| 33 | 33 |
import org.eclipse.core.commands.ExecutionException; |
| 34 | 34 |
import org.eclipse.jface.viewers.IStructuredSelection; |
| 35 | 35 |
import org.eclipse.ui.handlers.HandlerUtil; |
| 36 |
import org.txm.core.results.TXMResult; |
|
| 37 |
import org.txm.statsengine.r.core.RResult; |
|
| 36 | 38 |
|
| 37 | 39 |
// TODO: Auto-generated Javadoc |
| 38 | 40 |
/** |
| ... | ... | |
| 60 | 62 |
public static void copyFirst(IStructuredSelection selection) |
| 61 | 63 |
{
|
| 62 | 64 |
Object selectedItem = selection.getFirstElement(); |
| 63 |
String text = ""; //$NON-NLS-1$ |
|
| 64 |
try {
|
|
| 65 |
Method getname = selectedItem.getClass().getMethod("getSymbol"); //$NON-NLS-1$
|
|
| 66 |
text = (String)getname.invoke(selectedItem); |
|
| 67 |
} catch (Exception e2) {}
|
|
| 68 |
org.txm.rcp.utils.IOClipboard.write(text); |
|
| 65 |
if (selectedItem instanceof RResult) {
|
|
| 66 |
org.txm.rcp.utils.IOClipboard.write(((RResult)selectedItem).getRSymbol()); |
|
| 67 |
} else if (selectedItem instanceof TXMResult) {
|
|
| 68 |
org.txm.rcp.utils.IOClipboard.write(((TXMResult)selectedItem).getName()); |
|
| 69 |
} else {
|
|
| 70 |
org.txm.rcp.utils.IOClipboard.write(selectedItem.toString()); |
|
| 71 |
} |
|
| 69 | 72 |
} |
| 70 | 73 |
} |
| tmp/org.txm.statsengine.r.rcp/src/org/txm/statsengine/r/rcp/views/RVariablesView.java (revision 2596) | ||
|---|---|---|
| 61 | 61 |
import org.txm.Toolbox; |
| 62 | 62 |
import org.txm.core.results.TXMResult; |
| 63 | 63 |
import org.txm.objects.Project; |
| 64 |
import org.txm.objects.Workspace; |
|
| 64 | 65 |
import org.txm.rcp.IImageKeys; |
| 65 | 66 |
import org.txm.rcp.commands.R.CopySelection; |
| 66 | 67 |
import org.txm.rcp.handlers.files.EditFile; |
| ... | ... | |
| 69 | 70 |
import org.txm.searchengine.cqp.corpus.CorpusManager; |
| 70 | 71 |
import org.txm.searchengine.cqp.corpus.MainCorpus; |
| 71 | 72 |
import org.txm.searchengine.cqp.corpus.Partition; |
| 73 |
import org.txm.statsengine.r.core.RResult; |
|
| 72 | 74 |
import org.txm.statsengine.r.core.RWorkspace; |
| 73 | 75 |
import org.txm.statsengine.r.rcp.messages.RUIMessages; |
| 74 | 76 |
/** |
| ... | ... | |
| 109 | 111 |
if (activepage == null) |
| 110 | 112 |
return; |
| 111 | 113 |
RVariablesView rview = (RVariablesView) activepage.findView(RVariablesView.ID); |
| 112 |
if (rview != null) |
|
| 114 |
if (rview != null) {
|
|
| 113 | 115 |
rview._reload(); |
| 116 |
} |
|
| 114 | 117 |
} |
| 115 | 118 |
|
| 116 | 119 |
/** |
| ... | ... | |
| 119 | 122 |
public void _reload() {
|
| 120 | 123 |
tv.setContentProvider(new RVariablesTreeProvider()); |
| 121 | 124 |
tv.setLabelProvider(new RVariablesLabelProvider()); |
| 122 |
Collection<MainCorpus> corpora; |
|
| 123 | 125 |
try {
|
| 124 |
corpora = CorpusManager.getCorpusManager().getCorpora().values(); |
|
| 125 |
if (corpora != null) |
|
| 126 |
{
|
|
| 127 |
buildTreeContent(corpora); |
|
| 126 |
buildTreeContent(); |
|
| 128 | 127 |
tv.refresh(); |
| 129 |
} |
|
| 130 |
} catch (Exception e) { }
|
|
| 128 |
} catch (Exception e) { e.printStackTrace();}
|
|
| 131 | 129 |
} |
| 132 | 130 |
|
| 133 | 131 |
/** |
| ... | ... | |
| 135 | 133 |
* |
| 136 | 134 |
* @param corpora the corpora |
| 137 | 135 |
*/ |
| 138 |
protected void buildTreeContent(Collection<MainCorpus> corpora)
|
|
| 136 |
protected void buildTreeContent() |
|
| 139 | 137 |
{
|
| 140 |
ArrayList<TXMResult> notempty = new ArrayList<TXMResult>(corpora); |
|
| 141 |
for(TXMResult container : corpora) |
|
| 142 |
{
|
|
| 143 |
String symbol = null; |
|
| 144 |
try {
|
|
| 145 |
Method getname = container.getClass().getMethod("getSymbol"); //$NON-NLS-1$
|
|
| 146 |
symbol = (String)getname.invoke(container); |
|
| 147 |
} catch (Exception e2) {}
|
|
| 148 |
|
|
| 149 |
if (symbol != null) |
|
| 150 |
continue; |
|
| 151 |
|
|
| 152 |
//System.out.println("check "+container.getName());
|
|
| 153 |
if (container.getChildren().size() > 0 |
|
| 154 |
//FIXME: commented by SJ for TXMResult implementation |
|
| 155 |
//|| container.getSubHasResults().size() > 0 |
|
| 156 |
) |
|
| 157 |
{
|
|
| 158 |
if (!deepSearch(container)) |
|
| 159 |
notempty.remove(container); |
|
| 160 |
} |
|
| 161 |
else |
|
| 162 |
{
|
|
| 163 |
notempty.remove(container); |
|
| 164 |
} |
|
| 138 |
List<CQPCorpus> i = new ArrayList<CQPCorpus>(); |
|
| 139 |
for (Project p : Workspace.getInstance().getProjects()) {
|
|
| 140 |
i.addAll(p.getChildren(CQPCorpus.class)); |
|
| 165 | 141 |
} |
| 166 |
tv.setInput(notempty);
|
|
| 142 |
tv.setInput(i);
|
|
| 167 | 143 |
} |
| 168 | 144 |
|
| 169 | 145 |
/** |
| ... | ... | |
| 199 | 175 |
* @return true, if successful |
| 200 | 176 |
*/ |
| 201 | 177 |
private boolean hasSymbol(List<TXMResult> results) {
|
| 202 |
String symbol = null; |
|
| 203 | 178 |
for(Object rez : results) |
| 204 | 179 |
{
|
| 205 |
try {
|
|
| 206 |
Method getname = rez.getClass().getMethod("getSymbol"); //$NON-NLS-1$
|
|
| 207 |
symbol = (String)getname.invoke(rez); |
|
| 208 |
} catch (Exception e2) {}
|
|
| 209 |
if (symbol != null) |
|
| 180 |
if (rez instanceof RResult) |
|
| 210 | 181 |
return true; |
| 211 | 182 |
} |
| 212 | 183 |
return false; |
| ... | ... | |
| 218 | 189 |
@Override |
| 219 | 190 |
public void createPartControl(Composite parent) {
|
| 220 | 191 |
parent.setLayout(new GridLayout(2, true)); |
| 221 |
Button export = new Button(parent, SWT.PUSH);
|
|
| 222 |
export.setLayoutData(new GridData(GridData.FILL, GridData.FILL, true,
|
|
| 192 |
Button refreshButton = new Button(parent, SWT.PUSH);
|
|
| 193 |
refreshButton.setLayoutData(new GridData(GridData.FILL, GridData.FILL, true,
|
|
| 223 | 194 |
false)); |
| 224 |
export.setText(RUIMessages.refreshVariables);
|
|
| 225 |
export.addSelectionListener(new SelectionListener() {
|
|
| 195 |
refreshButton.setText(RUIMessages.refreshVariables);
|
|
| 196 |
refreshButton.addSelectionListener(new SelectionListener() {
|
|
| 226 | 197 |
@Override |
| 227 | 198 |
public void widgetSelected(SelectionEvent arg0) {
|
| 228 | 199 |
//System.out.println("reload");
|
| ... | ... | |
| 320 | 291 |
*/ |
| 321 | 292 |
@Override |
| 322 | 293 |
public String getText(Object element) {
|
| 323 |
String name =""; //$NON-NLS-1$ |
|
| 324 |
String symbol = null; |
|
| 325 |
|
|
| 326 |
try {
|
|
| 327 |
Method getname = element.getClass().getMethod("getName"); //$NON-NLS-1$
|
|
| 328 |
name = (String)getname.invoke(element); |
|
| 329 |
} catch (Exception e) {}
|
|
| 330 |
|
|
| 331 |
try {
|
|
| 332 |
Method getname = element.getClass().getMethod("getSymbol"); //$NON-NLS-1$
|
|
| 333 |
symbol = (String)getname.invoke(element); |
|
| 334 |
} catch (Exception e) {}
|
|
| 335 |
|
|
| 336 |
if (symbol == null) |
|
| 337 |
return name; |
|
| 338 |
else |
|
| 339 |
return NLS.bind(RUIMessages.tXMNameP0SupSupRNameP1, name, symbol); |
|
| 294 |
if (element instanceof RResult) {
|
|
| 295 |
if (element instanceof TXMResult) {
|
|
| 296 |
return NLS.bind(RUIMessages.tXMNameP0SupSupRNameP1, ((TXMResult)element).getName(), ((RResult)element).getRSymbol()); |
|
| 297 |
} else {
|
|
| 298 |
return ((RResult)element).getRSymbol(); |
|
| 299 |
} |
|
| 300 |
} else if (element instanceof TXMResult) {
|
|
| 301 |
return ((TXMResult)element).getName(); |
|
| 302 |
} else {
|
|
| 303 |
return element.toString(); |
|
| 304 |
} |
|
| 340 | 305 |
} |
| 341 | 306 |
|
| 342 | 307 |
/* (non-Javadoc) |
| ... | ... | |
| 365 | 330 |
public Object[] getChildren(Object element) {
|
| 366 | 331 |
//System.out.println("get children of "+element);
|
| 367 | 332 |
if (element instanceof TXMResult) {
|
| 368 |
// List<Object> results = ((HasResults) element).getResults(); |
|
| 369 |
// ArrayList<TXMResult> sub = ((HasResults) element).getSubHasResults(); |
|
| 370 |
//ArrayList<Object> children = new ArrayList<Object>(); |
|
| 371 |
// children.addAll(sub); |
|
| 372 |
// children.addAll(results); |
|
| 333 |
|
|
| 373 | 334 |
|
| 374 |
List<TXMResult> children = ((TXMResult)element).getDeepChildren(); |
|
| 335 |
ArrayList<Object> rresults = new ArrayList<>(); |
|
| 336 |
List<TXMResult> children = ((TXMResult)element).getChildren(); |
|
| 375 | 337 |
|
| 376 |
for(int i = 0 ; i < children.size() ; i++)
|
|
| 338 |
for(TXMResult r : children)
|
|
| 377 | 339 |
{
|
| 378 |
|
|
| 379 |
Object obj = children.get(i); |
|
| 380 |
//System.out.println("test > "+obj);
|
|
| 381 |
if (obj instanceof TXMResult) |
|
| 382 |
{
|
|
| 383 |
//System.out.println("deap "+obj);
|
|
| 384 |
if (!deepSearch((TXMResult) obj)) |
|
| 385 |
{
|
|
| 386 |
children.remove(i); |
|
| 387 |
i--; |
|
| 388 |
} |
|
| 340 |
if (r instanceof RResult && ((RResult)r).getRSymbol() != null) {
|
|
| 341 |
rresults.add(r); |
|
| 342 |
} else if (deepSearch(r)) {
|
|
| 343 |
rresults.add(r); |
|
| 389 | 344 |
} |
| 390 |
else |
|
| 391 |
{
|
|
| 392 |
String symbol = null; |
|
| 393 |
try {
|
|
| 394 |
Method getname = obj.getClass().getMethod("getSymbol"); //$NON-NLS-1$
|
|
| 395 |
symbol = (String)getname.invoke(obj); |
|
| 396 |
} catch (Exception e) {}
|
|
| 397 |
//System.out.println("symbol "+symbol);
|
|
| 398 |
if (symbol == null) |
|
| 399 |
{
|
|
| 400 |
children.remove(i); |
|
| 401 |
i--; |
|
| 402 |
} |
|
| 403 |
} |
|
| 404 | 345 |
} |
| 405 | 346 |
//System.out.println(""+element+" > "+children);
|
| 406 |
return children.toArray();
|
|
| 347 |
return rresults.toArray();
|
|
| 407 | 348 |
} |
| 408 | 349 |
return new Object[0]; |
| 409 | 350 |
} |
| ... | ... | |
| 413 | 354 |
*/ |
| 414 | 355 |
@Override |
| 415 | 356 |
public Object getParent(Object element) {
|
| 416 |
Partition partition = null; |
|
| 417 |
try {
|
|
| 418 |
Method getname = element.getClass().getMethod("getPartition"); //$NON-NLS-1$
|
|
| 419 |
partition = (Partition)getname.invoke(element); |
|
| 420 |
} catch (Exception e) {}
|
|
| 421 |
|
|
| 422 |
if (partition == null) |
|
| 423 |
{
|
|
| 424 |
return partition; |
|
| 357 |
if (element instanceof TXMResult) {
|
|
| 358 |
TXMResult r = (TXMResult)element; |
|
| 359 |
Partition p = r.getFirstParent(Partition.class); |
|
| 360 |
if (p != null) {
|
|
| 361 |
return p; |
|
| 362 |
} |
|
| 363 |
CQPCorpus c = r.getFirstParent(CQPCorpus.class); |
|
| 364 |
if (c != null) {
|
|
| 365 |
return c; |
|
| 366 |
} |
|
| 367 |
|
|
| 368 |
return null; |
|
| 369 |
} else {
|
|
| 370 |
return null; |
|
| 425 | 371 |
} |
| 426 |
|
|
| 427 |
CQPCorpus corpus = null; |
|
| 428 |
try {
|
|
| 429 |
Method getname = element.getClass().getMethod("getCorpus"); //$NON-NLS-1$
|
|
| 430 |
corpus = (CQPCorpus)getname.invoke(element); |
|
| 431 |
} catch (Exception e) {}
|
|
| 432 |
|
|
| 433 |
return corpus; |
|
| 434 | 372 |
} |
| 435 | 373 |
|
| 436 | 374 |
/* (non-Javadoc) |
| ... | ... | |
| 449 | 387 |
*/ |
| 450 | 388 |
@Override |
| 451 | 389 |
public Object[] getElements(Object element) {
|
| 390 |
System.out.println("input: "+element);
|
|
| 452 | 391 |
Collection<Project> input = (Collection<Project>) element; |
| 453 | 392 |
Object[] objects = new Object[input.size()]; |
| 454 | 393 |
Iterator<Project> it = input.iterator(); |
| tmp/org.txm.ca.core/src/org/txm/ca/core/statsengine/r/functions/CA.java (revision 2596) | ||
|---|---|---|
| 435 | 435 |
} |
| 436 | 436 |
return singularValues2; |
| 437 | 437 |
} |
| 438 |
|
|
| 439 |
@Override |
|
| 440 |
public String getEigenvaluesRSymbol() throws StatException {
|
|
| 441 |
return symbol+"$sv"; |
|
| 442 |
} |
|
| 438 | 443 |
|
| 439 | 444 |
/* (non-Javadoc) |
| 440 | 445 |
* @see org.txm.stat.engine.r.function.ICA#getSymbol() |
| tmp/org.txm.ca.core/src/org/txm/ca/core/statsengine/r/functions/FactoMineRCA.java (revision 2596) | ||
|---|---|---|
| 446 | 446 |
return eigenvalues; |
| 447 | 447 |
|
| 448 | 448 |
} |
| 449 |
|
|
| 450 |
/** |
|
| 451 |
* Gets the valeurs propres. |
|
| 452 |
* |
|
| 453 |
* @return the singular values pow 2 |
|
| 454 |
* @throws StatException the stat exception |
|
| 455 |
*/ |
|
| 456 |
@Override |
|
| 457 |
public String getEigenvaluesRSymbol() throws StatException {
|
|
| 458 |
return symbol+"$eig$eigenvalue"; |
|
| 459 |
} |
|
| 449 | 460 |
|
| 450 | 461 |
/* (non-Javadoc) |
| 451 | 462 |
* @see org.txm.stat.engine.r.function.ICA#loadLibrary() |
| tmp/org.txm.ca.core/src/org/txm/ca/core/statsengine/r/functions/ICA.java (revision 2596) | ||
|---|---|---|
| 170 | 170 |
* @throws StatException the stat exception |
| 171 | 171 |
*/ |
| 172 | 172 |
public double[] getEigenvalues() throws StatException; |
| 173 |
|
|
| 174 |
/** |
|
| 175 |
* Gets the valeurs propres. |
|
| 176 |
* |
|
| 177 |
* @return the valeurs propres |
|
| 178 |
* @throws StatException the stat exception |
|
| 179 |
*/ |
|
| 180 |
public String getEigenvaluesRSymbol() throws StatException; |
|
| 173 | 181 |
|
| 174 | 182 |
/** |
| 175 | 183 |
* Load library. |
| tmp/org.txm.ca.core/src/org/txm/ca/core/functions/CA.java (revision 2596) | ||
|---|---|---|
| 47 | 47 |
import org.txm.lexicaltable.core.functions.LexicalTable; |
| 48 | 48 |
import org.txm.searchengine.cqp.corpus.Property; |
| 49 | 49 |
import org.txm.statsengine.core.StatException; |
| 50 |
import org.txm.statsengine.r.core.RResult; |
|
| 50 | 51 |
import org.txm.statsengine.r.core.RWorkspace; |
| 51 | 52 |
import org.txm.statsengine.r.core.exceptions.RWorkspaceException; |
| 52 | 53 |
import org.txm.utils.logger.Log; |
| ... | ... | |
| 59 | 60 |
* @author sloiseau |
| 60 | 61 |
* |
| 61 | 62 |
*/ |
| 62 |
public class CA extends ChartResult {
|
|
| 63 |
public class CA extends ChartResult implements RResult {
|
|
| 63 | 64 |
|
| 64 | 65 |
/** The ca. */ |
| 65 | 66 |
private ICA r_ca; |
| ... | ... | |
| 864 | 865 |
return svtabledata; |
| 865 | 866 |
} |
| 866 | 867 |
|
| 867 |
/** |
|
| 868 |
* Gets the symbol. |
|
| 869 |
* |
|
| 870 |
* @return the R symbol of the CA result |
|
| 871 |
*/ |
|
| 872 |
public String getSymbol() {
|
|
| 868 |
@Override |
|
| 869 |
public String getRSymbol() {
|
|
| 873 | 870 |
return r_ca.getSymbol(); |
| 874 | 871 |
} |
| 875 | 872 |
|
| tmp/org.txm.ca.core/src/org/txm/ca/core/functions/Eigenvalues.java (revision 2596) | ||
|---|---|---|
| 10 | 10 |
import org.txm.core.preferences.TXMPreferences; |
| 11 | 11 |
import org.txm.core.results.TXMParameters; |
| 12 | 12 |
import org.txm.core.results.TXMResult; |
| 13 |
import org.txm.statsengine.core.StatException; |
|
| 14 |
import org.txm.statsengine.r.core.RResult; |
|
| 13 | 15 |
|
| 14 | 16 |
/** |
| 15 | 17 |
* Eigenvalues chart result. |
| ... | ... | |
| 17 | 19 |
* @author sjacquot |
| 18 | 20 |
* |
| 19 | 21 |
*/ |
| 20 |
public class Eigenvalues extends ChartResult {
|
|
| 22 |
public class Eigenvalues extends ChartResult implements RResult {
|
|
| 21 | 23 |
|
| 22 | 24 |
/** |
| 23 | 25 |
* @param parent |
| ... | ... | |
| 71 | 73 |
} |
| 72 | 74 |
|
| 73 | 75 |
@Override |
| 76 |
public String getRSymbol() {
|
|
| 77 |
try {
|
|
| 78 |
return this.getCA().getCA().getEigenvaluesRSymbol(); |
|
| 79 |
} catch (Exception e) {
|
|
| 80 |
e.printStackTrace(); |
|
| 81 |
return null; |
|
| 82 |
} |
|
| 83 |
} |
|
| 84 |
|
|
| 85 |
@Override |
|
| 74 | 86 |
public void clean() {
|
| 75 | 87 |
// nothing to do |
| 76 | 88 |
} |
| tmp/org.txm.lexicaltable.core/src/org/txm/lexicaltable/core/functions/LexicalTable.java (revision 2596) | ||
|---|---|---|
| 27 | 27 |
import org.txm.searchengine.cqp.corpus.Subcorpus; |
| 28 | 28 |
import org.txm.searchengine.cqp.corpus.WordProperty; |
| 29 | 29 |
import org.txm.statsengine.core.data.Vector; |
| 30 |
import org.txm.statsengine.r.core.RResult; |
|
| 30 | 31 |
import org.txm.statsengine.r.core.RWorkspace; |
| 31 | 32 |
import org.txm.statsengine.r.core.exceptions.RWorkspaceException; |
| 32 | 33 |
import org.txm.utils.logger.Log; |
| ... | ... | |
| 40 | 41 |
* |
| 41 | 42 |
*/ |
| 42 | 43 |
// TODO: SJ: add a fMax filter |
| 43 |
public class LexicalTable extends TXMResult {
|
|
| 44 |
public class LexicalTable extends TXMResult implements RResult {
|
|
| 44 | 45 |
|
| 45 | 46 |
public static Integer LEXICALTABLE_COUNTER = new Integer(1); |
| 46 | 47 |
|
| ... | ... | |
| 436 | 437 |
} |
| 437 | 438 |
} |
| 438 | 439 |
|
| 440 |
@Override |
|
| 441 |
public String getRSymbol() {
|
|
| 442 |
if (statsData == null) return null; |
|
| 443 |
|
|
| 444 |
return statsData.getSymbol(); |
|
| 445 |
} |
|
| 446 |
|
|
| 439 | 447 |
public Vector getColMarginsVector() {
|
| 440 | 448 |
try {
|
| 441 | 449 |
return statsData.getColMarginsVector(); |
| tmp/org.txm.statsengine.r.core/src/org/txm/statsengine/r/core/RResult.java (revision 2596) | ||
|---|---|---|
| 1 |
package org.txm.statsengine.r.core; |
|
| 2 |
|
|
| 3 |
public interface RResult {
|
|
| 4 |
/** |
|
| 5 |
* |
|
| 6 |
* @return the R result symbol if any (null if not linked to a R result) |
|
| 7 |
*/ |
|
| 8 |
public String getRSymbol(); |
|
| 9 |
} |
|
| 0 | 10 | |
Formats disponibles : Unified diff