root / doc / sphinx_doc / ref.rst @ e5603c3f
Historique | Voir | Annoter | Télécharger (1,29 ko)
| 1 | 935a568c | Florent Chuffart | |
|---|---|---|---|
| 2 | 935a568c | Florent Chuffart | References |
| 3 | 935a568c | Florent Chuffart | ========== |
| 4 | 935a568c | Florent Chuffart | |
| 5 | 935a568c | Florent Chuffart | Python Reference |
| 6 | 935a568c | Florent Chuffart | $$$$$$$$$$$$$$$$ |
| 7 | 935a568c | Florent Chuffart | |
| 8 | 935a568c | Florent Chuffart | .. autodata:: configurator.CSV_SAMPLE_FILE |
| 9 | 935a568c | Florent Chuffart | .. autodata:: configurator.BOWTIE_BUILD_BIN |
| 10 | 935a568c | Florent Chuffart | .. autodata:: configurator.BOWTIE2_BIN |
| 11 | 935a568c | Florent Chuffart | .. autodata:: configurator.SAMTOOLS_BIN |
| 12 | 935a568c | Florent Chuffart | .. autodata:: configurator.BEDTOOLS_BIN |
| 13 | 935a568c | Florent Chuffart | .. autodata:: configurator.TF_BIN |
| 14 | 935a568c | Florent Chuffart | .. autodata:: configurator.TF_TEMPLATES_FILE |
| 15 | 935a568c | Florent Chuffart | .. autodata:: configurator.ILLUMINA_OUTPUTFILE_PREFIX |
| 16 | 935a568c | Florent Chuffart | .. autodata:: configurator.INDEX_DIR |
| 17 | 935a568c | Florent Chuffart | .. autodata:: configurator.ALIGN_DIR |
| 18 | 935a568c | Florent Chuffart | .. autodata:: configurator.LOG_DIR |
| 19 | 935a568c | Florent Chuffart | .. autodata:: configurator.CACHE_DIR |
| 20 | 935a568c | Florent Chuffart | .. autodata:: configurator.RESULTS_DIR |
| 21 | 935a568c | Florent Chuffart | .. autodata:: configurator.FASTA_REFERENCE_GENOME_FILES |
| 22 | 935a568c | Florent Chuffart | .. autodata:: configurator.AREA_BLACK_LIST |
| 23 | 935a568c | Florent Chuffart | .. autodata:: configurator.FASTA_INDEXES |
| 24 | 935a568c | Florent Chuffart | .. autodata:: configurator.C2C_FILES |
| 25 | 935a568c | Florent Chuffart | .. autodata:: configurator.READ_LENGTH |
| 26 | 935a568c | Florent Chuffart | .. autodata:: configurator.MAPQ_THRES |
| 27 | 935a568c | Florent Chuffart | .. autodata:: configurator.TF_CORR |
| 28 | 935a568c | Florent Chuffart | .. autodata:: configurator.TF_MINW |
| 29 | 935a568c | Florent Chuffart | .. autodata:: configurator.TF_MAXW |
| 30 | 935a568c | Florent Chuffart | .. autodata:: configurator.TF_OL |
| 31 | 935a568c | Florent Chuffart | |
| 32 | 935a568c | Florent Chuffart | .. autodata:: wf.json_conf_file |
| 33 | 935a568c | Florent Chuffart | .. autodata:: wf.samples |
| 34 | 935a568c | Florent Chuffart | .. autodata:: wf.samples_mnase |
| 35 | 935a568c | Florent Chuffart | .. autodata:: wf.strains |
| 36 | 935a568c | Florent Chuffart | |
| 37 | 935a568c | Florent Chuffart | |
| 38 | 935a568c | Florent Chuffart | |
| 39 | 935a568c | Florent Chuffart | |
| 40 | 935a568c | Florent Chuffart | .. autofunction:: libcoverage.create_bowtie_index |
| 41 | 935a568c | Florent Chuffart | .. autofunction:: libcoverage.align_reads |
| 42 | 935a568c | Florent Chuffart | .. autofunction:: libcoverage.split_fr_4_TF |
| 43 | 935a568c | Florent Chuffart | .. autofunction:: libcoverage.template_filter |
| 44 | 935a568c | Florent Chuffart | |
| 45 | 935a568c | Florent Chuffart | |
| 46 | 935a568c | Florent Chuffart | R Reference |
| 47 | 935a568c | Florent Chuffart | $$$$$$$$$$$ |
| 48 | 935a568c | Florent Chuffart | |
| 49 | 935a568c | Florent Chuffart | |
| 50 | 935a568c | Florent Chuffart | .. include:: rref.rst |