Révision cc54d805
| b/doc/sphinx_doc/conf.py | ||
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# built documents. |
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# |
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# The short X.Y version. |
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version = '2.3.50'
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version = '2.3.51'
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# The full version, including alpha/beta/rc tags. |
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release = '2.3.50'
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release = '2.3.51'
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# The language for content autogenerated by Sphinx. Refer to documentation |
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# for a list of supported languages. |
| b/doc/sphinx_doc/rref.rst | ||
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| 1256 | 1256 |
+---------------+---------------------------------------------------+ |
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| Author: | Florent Chuffart | |
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+---------------+---------------------------------------------------+ |
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| Version: | 2.3.50 |
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| Version: | 2.3.51 |
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+---------------+---------------------------------------------------+ |
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| License: | CeCILL | |
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+---------------+---------------------------------------------------+ |
| b/src/DESCRIPTION | ||
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| 1 | 1 |
Package: nucleominer |
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Maintainer: Florent Chuffart <florent.chuffart@ens-lyon.fr> |
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Author: Florent Chuffart |
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Version: 2.3.50
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Version: 2.3.51
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License: CeCILL |
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Title: nm |
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Depends: seqinr, plotrix, DESeq, cachecache, dplyr |
| b/src/R/nucleominer.R | ||
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| 2023 | 2023 |
if (plot_wp_nucs | plot_fuzzy_nucs | plot_common_nucs ) {
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replicates_wp_nucs[[replicate_rank]] = wp_nucs |
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strain = samples[[1]]$strain |
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nb_tracks = length(replicates[[1]]) |
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# print(paste("**************"), nb_tracks)
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wp_maps[[strain]] = flat_aggregated_intra_strain_nucs(wp_nucs, "foo", nb_tracks) |
| 2027 | 2029 |
fuzzy_maps[[strain]] = get_intra_strain_fuzzy(wp_maps[[strain]], as.list(samples[[1]]$roi), samples[[1]]$strain, config=config) |
| 2028 | 2030 |
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Formats disponibles : Unified diff