root / doc / sphinx_doc / ref.rst @ b20637ed
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References |
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========== |
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Python Reference |
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.. autodata:: configurator.CSV_SAMPLE_FILE |
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.. autodata:: configurator.BOWTIE_BUILD_BIN |
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.. autodata:: configurator.BOWTIE2_BIN |
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.. autodata:: configurator.SAMTOOLS_BIN |
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.. autodata:: configurator.BEDTOOLS_BIN |
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.. autodata:: configurator.TF_BIN |
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.. autodata:: configurator.TF_TEMPLATES_FILE |
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.. autodata:: configurator.ILLUMINA_OUTPUTFILE_PREFIX |
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.. autodata:: configurator.INDEX_DIR |
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.. autodata:: configurator.ALIGN_DIR |
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.. autodata:: configurator.LOG_DIR |
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.. autodata:: configurator.CACHE_DIR |
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.. autodata:: configurator.RESULTS_DIR |
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.. autodata:: configurator.FASTA_REFERENCE_GENOME_FILES |
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.. autodata:: configurator.AREA_BLACK_LIST |
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.. autodata:: configurator.FASTA_INDEXES |
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.. autodata:: configurator.C2C_FILES |
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.. autodata:: configurator.READ_LENGTH |
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.. autodata:: configurator.MAPQ_THRES |
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.. autodata:: configurator.TF_CORR |
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.. autodata:: configurator.TF_MINW |
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.. autodata:: configurator.TF_MAXW |
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.. autodata:: configurator.TF_OL |
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.. autodata:: wf.json_conf_file |
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.. autodata:: wf.samples |
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.. autodata:: wf.samples_mnase |
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.. autodata:: wf.strains |
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.. autofunction:: libcoverage.create_bowtie_index |
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.. autofunction:: libcoverage.align_reads |
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.. autofunction:: libcoverage.split_fr_4_TF |
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.. autofunction:: libcoverage.template_filter |
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R Reference |
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.. include:: rref.rst |