Révision b20637ed doc/sphinx_doc/tuto.rst
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The second part of the tutoriel use `R` (http://http://www.r-project.org). It |
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consists in the 3 main steps corresponding to 4 R scripts:
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consists in the following main steps:
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- compute_rois.R |
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- extract_maps.R |
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- compare_common_wp.R |
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- split_samples.R |
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- count_reads.R |
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- get_size_factors |
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- launch_deseq.R |
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R CMD BATCH src/current/extract_maps.R |
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Compute Distance Between Well Positionned Nucleosomes |
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^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
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.. code:: bash |
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R CMD BATCH src/current/compare_common_wp.R |
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Split and Compress Samples According CURs |
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^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
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.. code:: bash |
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R CMD BATCH src/current/split_samples.R |
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Count Reads for Each Nucleosome |
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^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
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