root / src / NAMESPACE @ 780f632a
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export(flat_aggregated_intra_strain_nucs, FDR, llr_score_nvecs, dfadd, filter_tf_inputs, filter_tf_outputs, sign_from_strand, flat_reads, get_comp_strand, aggregate_intra_strain_nucs, align_inter_strain_nucs, translate_cur, fetch_mnase_replicates, substract_region, union_regions, collapse_regions, translate_regions, crop_fuzzy, get_all_reads, get_design, plot_dist_samples, analyse_count_table, watch_samples, compute_curs, switch_pairlist, build_replicates, ARAB2ROM, ROM2ARAB, get_intra_strain_fuzzy, get_unrs, build_maps, build_count_table) |
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importFrom(memoise,memoise) |
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importFrom(DESeq, newCountDataSet) |
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importFrom(DESeq, estimateDispersions) |
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importFrom(DESeq, estimateSizeFactors) |
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importFrom(DESeq, fitNbinomGLMs) |
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importFrom(DESeq, nbinomGLMTest) |
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importFrom(DESeq, nbinomTest) |
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importFrom(plotrix, draw.ellipse) |
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importFrom(seqinr, read.fasta) |
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