Révision 780f632a src/NAMESPACE
| b/src/NAMESPACE | ||
|---|---|---|
| 1 |
export(flat_aggregated_intra_strain_nucs, FDR, llr_score_nvecs, dfadd, filter_tf_inputs, filter_tf_outputs, sign_from_strand, flat_reads, get_comp_strand, aggregate_intra_strain_nucs, align_inter_strain_nucs, translate_cur, fetch_mnase_replicates, substract_region, union_regions, collapse_regions, translate_regions, crop_fuzzy, get_all_reads, get_design, plot_dist_samples, analyse_design, get_sneps, watch_samples, compute_inter_all_strain_curs, switch_pairlist, build_replicates, ARAB2ROM, ROM2ARAB, get_intra_strain_fuzzy, get_unrs, build_maps, build_count_table)
|
|
| 1 |
export(flat_aggregated_intra_strain_nucs, FDR, llr_score_nvecs, dfadd, filter_tf_inputs, filter_tf_outputs, sign_from_strand, flat_reads, get_comp_strand, aggregate_intra_strain_nucs, align_inter_strain_nucs, translate_cur, fetch_mnase_replicates, substract_region, union_regions, collapse_regions, translate_regions, crop_fuzzy, get_all_reads, get_design, plot_dist_samples, analyse_count_table, watch_samples, compute_curs, switch_pairlist, build_replicates, ARAB2ROM, ROM2ARAB, get_intra_strain_fuzzy, get_unrs, build_maps, build_count_table)
|
|
| 2 | 2 |
importFrom(memoise,memoise) |
| 3 | 3 |
importFrom(DESeq, newCountDataSet) |
| 4 | 4 |
importFrom(DESeq, estimateDispersions) |
| 5 | 5 |
importFrom(DESeq, estimateSizeFactors) |
| 6 | 6 |
importFrom(DESeq, fitNbinomGLMs) |
| 7 | 7 |
importFrom(DESeq, nbinomGLMTest) |
| 8 |
importFrom(DESeq, nbinomTest) |
|
| 8 | 9 |
importFrom(plotrix, draw.ellipse) |
| 9 | 10 |
importFrom(seqinr, read.fasta) |
| 10 | 11 |
|
Formats disponibles : Unified diff