Révision 729c934e doc/sphinx_doc/rref.rst
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aggregate_intra_strain_nucs(samples, lod_thres = -20, coord_max = 2e+07)
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aggregate_intra_strain_nucs(samples, lod_thres = 20, coord_max = 2e+07) |
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Arguments |
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~~~~~~~~~ |
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align_inter_strain_nucs(replicates, wp_nucs_strain_ref1 = NULL, |
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wp_nucs_strain_ref2 = NULL, corr_thres = 0.5, lod_thres = -100,
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wp_nucs_strain_ref2 = NULL, corr_thres = 0.5, lod_thres = 100, |
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config = NULL, ...) |
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Arguments |
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+---------------+---------------------------------------------------+ |
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| Author: | Florent Chuffart | |
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+---------------+---------------------------------------------------+ |
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| Version: | 2.3.23 |
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| Version: | 2.3.24 |
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+---------------+---------------------------------------------------+ |
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| License: | CeCILL | |
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+---------------+---------------------------------------------------+ |
| ... | ... | |
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plot_gaussian_unified_reads = TRUE, plot_ellipse_nucs = TRUE, |
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plot_wp_nucs = TRUE, plot_wp_nuc_model = TRUE, plot_common_nucs = TRUE, |
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plot_anovas = FALSE, plot_anova_boxes = FALSE, plot_wp_nucs_4_nonmnase = FALSE, |
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aggregated_intra_strain_nucs = NULL, aligned_inter_strain_nucs = NULL,
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height = 10, config = NULL) |
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plot_chain = FALSE, aggregated_intra_strain_nucs = NULL,
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aligned_inter_strain_nucs = NULL, height = 10, config = NULL)
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Arguments |
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~~~~~~~~~ |
| ... | ... | |
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Plot (or not) clusters for non inputs samples. |
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``plot_chain`` |
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Plot (or not) clusterised nuceosomes between mnase samples. |
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``aggregated_intra_strain_nucs`` |
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list of aggregated intra strain nucs. If NULL, it will be computed. |
Formats disponibles : Unified diff