Révision 6e0010bc doc/sphinx_doc/rref.rst
b/doc/sphinx_doc/rref.rst | ||
---|---|---|
1252 | 1252 |
+---------------+---------------------------------------------------+ |
1253 | 1253 |
| Author: | Florent Chuffart | |
1254 | 1254 |
+---------------+---------------------------------------------------+ |
1255 |
| Version: | 2.3.39 |
|
|
1255 |
| Version: | 2.3.40 |
|
|
1256 | 1256 |
+---------------+---------------------------------------------------+ |
1257 | 1257 |
| License: | CeCILL | |
1258 | 1258 |
+---------------+---------------------------------------------------+ |
... | ... | |
1586 | 1586 |
plot_gaussian_unified_reads = TRUE, plot_ellipse_nucs = TRUE, |
1587 | 1587 |
change_col = TRUE, plot_wp_nucs = TRUE, plot_fuzzy_nucs = TRUE, |
1588 | 1588 |
plot_wp_nuc_model = TRUE, plot_common_nucs = FALSE, plot_common_unrs = FALSE, |
1589 |
plot_wp_nucs_4_nonmnase = FALSE, plot_chain = FALSE, aggregated_intra_strain_nucs = NULL, |
|
1590 |
aligned_inter_strain_nucs = NULL, height = 10, config = NULL) |
|
1589 |
plot_wp_nucs_4_nonmnase = FALSE, plot_chain = FALSE, plot_sample_id = FALSE, |
|
1590 |
aggregated_intra_strain_nucs = NULL, aligned_inter_strain_nucs = NULL, |
|
1591 |
height = 10, main = NULL, xlab = NULL, ylab = "#reads (per million reads)", |
|
1592 |
config = NULL) |
|
1591 | 1593 |
|
1592 | 1594 |
Arguments |
1593 | 1595 |
~~~~~~~~~ |
... | ... | |
1664 | 1666 |
|
1665 | 1667 |
Plot (or not) clusterised nuceosomes between mnase samples. |
1666 | 1668 |
|
1669 |
``plot_sample_id`` |
|
1670 |
|
|
1671 |
Plot (or not) the sample id for each sample. |
|
1672 |
|
|
1667 | 1673 |
``aggregated_intra_strain_nucs`` |
1668 | 1674 |
|
1669 | 1675 |
list of aggregated intra strain nucs. If NULL, it will be computed. |
... | ... | |
1677 | 1683 |
Number of reads in per million read for each sample, graphical parametre |
1678 | 1684 |
for the y axis. |
1679 | 1685 |
|
1686 |
``main`` |
|
1687 |
|
|
1688 |
main title of the produced plot |
|
1689 |
|
|
1690 |
``xlab`` |
|
1691 |
|
|
1692 |
xlab of the produced plot |
|
1693 |
|
|
1694 |
``ylab`` |
|
1695 |
|
|
1696 |
ylab of the produced plot |
|
1697 |
|
|
1680 | 1698 |
``config`` |
1681 | 1699 |
|
1682 | 1700 |
GLOBAL config variable |
Formats disponibles : Unified diff