LBMC » NucleoMiner

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| Author:       | Florent Chuffart                                  |

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| License:      | CeCILL                                            |

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        plot_arrow_raw_reads = TRUE, plot_arrow_nuc_reads = TRUE, 

        plot_squared_reads = TRUE, plot_coverage = FALSE, plot_gaussian_reads = TRUE, 

        plot_gaussian_unified_reads = TRUE, plot_ellipse_nucs = TRUE, 

        plot_wp_nuc_model = TRUE, plot_common_nucs = FALSE, plot_common_unrs = FALSE, 

        plot_wp_nucs_4_nonmnase = FALSE, plot_chain = FALSE, plot_sample_id = FALSE, 

        aggregated_intra_strain_nucs = NULL, aligned_inter_strain_nucs = NULL, 

Package: nucleominer

Maintainer: Florent Chuffart <florent.chuffart@ens-lyon.fr>

Author: Florent Chuffart

License: CeCILL 

Title: nm

Depends: seqinr, plotrix, DESeq, cachecache, dplyr

plot_ellipse_nucs = TRUE,  ##<< Plot (or not) ellipse for a nuc.

change_col = TRUE, ##<< Change the color of each nucleosome.

plot_wp_nucs = TRUE,  ##<< Plot (or not) cluster of nucs

plot_wp_nuc_model = TRUE,  ##<< Plot (or not) gaussian model for a cluster of nucs

plot_common_nucs = FALSE,  ##<< Plot (or not) aligned reads.

plot_common_unrs = FALSE,  ##<< Plot (or not) unaligned nucleosomal refgions (UNRs).