Révision d072e29c README
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Installation |
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... |
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rsync -cauvz --exclude="formatdb.log" --exclude=".DS_Store" ../src/ root@cremone:/var/www/labstocks/ |
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cd /var/www/labstocks |
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# sudo vi connect_entry.php |
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sudo touch formatdb.log |
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sudo chmod 440 connect_entry.php |
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sudo chown -R www-data:www-data connect_entry.php formatdb.log plasmid_files raw_dirs |
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Migration |
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cd /var/www/labstocks |
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sudo cp -r ../labstocks.bck2/plasmid_files/*.gb.gz plasmid_files/. |
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sudo chmod -R a+r plasmid_files |
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sudo chown -R www-data:www-data plasmid_files |
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sudo cp -r ../labstocks.bck2/collections collections/. |
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cd raw_dirs/antibodies/ |
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sudo mkdir `for ((a=1; a <= 24 ; a++)); do echo $a ; done` |
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cd ../.. |
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sudo cp ../labstocks.bck2/antibody_files/10.Anti-H3K14ac\(07-353\).pdf raw_dirs/antibodies/10/Anti-H3K14ac\(07-353\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/11.Anti-H3ac\(06-599\).pdf raw_dirs/antibodies/11/Anti-H3ac\(06-599\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/12.Anti-H3\(ab1791\).pdf raw_dirs/antibodies/12/Anti-H3\(ab1791\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/13.Anti-FLAG\(F7425\).pdf raw_dirs/antibodies/13/Anti-FLAG\(F7425\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/14.Cre-Recombinase\(PRB-106C\).pdf raw_dirs/antibodies/14/Cre-Recombinase\(PRB-106C\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/15.GAPDH-HRP\(ab85760\).pdf raw_dirs/antibodies/15/GAPDH-HRP\(ab85760\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/16.Anti-H3K9ac\(ab10812\).pdf raw_dirs/antibodies/16/Anti-H3K9ac\(ab10812\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/17.Anti-H3K4me3\(CS-003-100\).pdf raw_dirs/antibodies/17/Anti-H3K4me3\(CS-003-100\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/18.Anti-H3\(ab1791\).pdf raw_dirs/antibodies/18/Anti-H3\(ab1791\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/19.Anti-H3K4me1\(07-436\).pdf raw_dirs/antibodies/19/Anti-H3K4me1\(07-436\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/1.Anti-Actin-C4\(69100\).pdf raw_dirs/antibodies/1/Anti-Actin-C4\(69100\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/20.Anti-H3K14ac\(07-353\).pdf raw_dirs/antibodies/20/Anti-H3K14ac\(07-353\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/21.Anti-H4K12ac\(07-595\).pdf raw_dirs/antibodies/21/Anti-H4K12ac\(07-595\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/22.Anti-Htz1\(39647\).pdf raw_dirs/antibodies/22/Anti-Htz1\(39647\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/23.Anti-H2AFZ\(ab4626\).pdf raw_dirs/antibodies/23/Anti-H2AFZ\(ab4626\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/24.Anti-LexA-DBD\(39185\).pdf raw_dirs/antibodies/24/Anti-LexA-DBD\(39185\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/2.Anti-Myc\(06-340\).pdf raw_dirs/antibodies/2/Anti-Myc\(06-340\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/3.Anti-H3\(ab10799\).pdf raw_dirs/antibodies/3/Anti-H3\(ab10799\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/4.Anti-H3\(ab24834\).pdf raw_dirs/antibodies/4/Anti-H3\(ab24834\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/5.Anti-H3K4me2\(ab7766\).pdf raw_dirs/antibodies/5/Anti-H3K4me2\(ab7766\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/6.Anti-H3K4me3\(ab8580\).pdf raw_dirs/antibodies/6/Anti-H3K4me3\(ab8580\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/7.Anti-H3K27me3\(07-449\).pdf raw_dirs/antibodies/7/Anti-H3K27me3\(07-449\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/8.Anti-H4K12ac\(06-761\).pdf raw_dirs/antibodies/8/Anti-H4K12ac\(06-761\).pdf |
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sudo cp ../labstocks.bck2/antibody_files/9.Beta-Actin-AC74\(A2228\).pdf raw_dirs/antibodies/9/Beta-Actin-AC74\(A2228\).pdf |
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sudo chmod -R a+r raw_dirs |
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sudo chown -R www-data:www-data raw_dirs |
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# upload gene_synthesis_reports_pGY247.zip and gene_synthesis_reports_pGY248.zip |
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scp -r stainer:Desktop/LBMC/projects/plasmapper/src/plasmid_files labstocks |
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vi labstocks/connect_entry.php |
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sudo cp -r labstocks /var/www/ |
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sudo chmod 440 /var/www/labstocks/connect_entry.php |
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sudo chown www-data:www-data /var/www/labstocks/connect_entry.php |
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sudo chown -R www-data:www-data /var/www/labstocks/plasmid_files |
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sudo chown -R www-data:www-data /var/www/labstocks/raw_dirs |
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sudo touch /var/www/labstocks/formatdb.log |
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sudo chown www-data:www-data /var/www/labstocks/formatdb.log |
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Usage |
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===== |
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`LYS2`, `MET15`, `TRP1`, `URA3`, `HO_`, `Cytoplasmic_Character` or |
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`extrachromosomal_plasmid` contain the given expression. This filter is case |
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insensitive. |
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Even in edit mode, users are not granted permission to directly edit a plasmid |
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sequence, nor the URL to the plasmid sequence file. If a new sequence must be |
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entered instead of the current one, users must upload a new sequence file, in |
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.gb or .gb.gz format. MyLabStocks then automatically reads the file and update |
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the sequence field and the URL. This ensures consistency between URL, sequence |
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and the file itself. |
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TODO |
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==== |
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- Upload a .gb file, gzip it on fly for plasmids. |
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- Bug with plasmid 246, having a look on log file: tail -f /var/log/tomcat6/catalina.out |
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- Add persistence on advanced search form conditions. |
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- Remove file field for antibodies |
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- More error msg when an uploaded file is too big. (>2Mo). |
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Formats disponibles : Unified diff