LBMC » MyLabStocks

rsync -cauvz  --exclude="formatdb.log" --exclude=".DS_Store" ../src/ root@cremone:/var/www/labstocks/

cd /var/www/labstocks

# sudo vi connect_entry.php 

sudo touch formatdb.log

sudo chmod 440 connect_entry.php 

sudo chown -R www-data:www-data connect_entry.php formatdb.log  plasmid_files raw_dirs

Migration

cd /var/www/labstocks

sudo cp -r ../labstocks.bck2/plasmid_files/*.gb.gz plasmid_files/.

sudo chmod -R a+r plasmid_files

sudo chown -R www-data:www-data plasmid_files

sudo cp -r ../labstocks.bck2/collections collections/.

cd raw_dirs/antibodies/

sudo mkdir `for ((a=1; a <= 24 ; a++)); do echo $a ; done`

cd ../..

sudo cp ../labstocks.bck2/antibody_files/10.Anti-H3K14ac\(07-353\).pdf                raw_dirs/antibodies/10/Anti-H3K14ac\(07-353\).pdf                            

sudo cp ../labstocks.bck2/antibody_files/11.Anti-H3ac\(06-599\).pdf                   raw_dirs/antibodies/11/Anti-H3ac\(06-599\).pdf                               

sudo cp ../labstocks.bck2/antibody_files/12.Anti-H3\(ab1791\).pdf                     raw_dirs/antibodies/12/Anti-H3\(ab1791\).pdf                                 

sudo cp ../labstocks.bck2/antibody_files/13.Anti-FLAG\(F7425\).pdf                    raw_dirs/antibodies/13/Anti-FLAG\(F7425\).pdf                                

sudo cp ../labstocks.bck2/antibody_files/14.Cre-Recombinase\(PRB-106C\).pdf           raw_dirs/antibodies/14/Cre-Recombinase\(PRB-106C\).pdf                        

sudo cp ../labstocks.bck2/antibody_files/15.GAPDH-HRP\(ab85760\).pdf                  raw_dirs/antibodies/15/GAPDH-HRP\(ab85760\).pdf                              

sudo cp ../labstocks.bck2/antibody_files/16.Anti-H3K9ac\(ab10812\).pdf                raw_dirs/antibodies/16/Anti-H3K9ac\(ab10812\).pdf                            

sudo cp ../labstocks.bck2/antibody_files/17.Anti-H3K4me3\(CS-003-100\).pdf            raw_dirs/antibodies/17/Anti-H3K4me3\(CS-003-100\).pdf                         

sudo cp ../labstocks.bck2/antibody_files/18.Anti-H3\(ab1791\).pdf                     raw_dirs/antibodies/18/Anti-H3\(ab1791\).pdf                                 

sudo cp ../labstocks.bck2/antibody_files/19.Anti-H3K4me1\(07-436\).pdf                raw_dirs/antibodies/19/Anti-H3K4me1\(07-436\).pdf                            

sudo cp ../labstocks.bck2/antibody_files/1.Anti-Actin-C4\(69100\).pdf                 raw_dirs/antibodies/1/Anti-Actin-C4\(69100\).pdf                             

sudo cp ../labstocks.bck2/antibody_files/20.Anti-H3K14ac\(07-353\).pdf                raw_dirs/antibodies/20/Anti-H3K14ac\(07-353\).pdf                            

sudo cp ../labstocks.bck2/antibody_files/21.Anti-H4K12ac\(07-595\).pdf                raw_dirs/antibodies/21/Anti-H4K12ac\(07-595\).pdf                            

sudo cp ../labstocks.bck2/antibody_files/22.Anti-Htz1\(39647\).pdf                    raw_dirs/antibodies/22/Anti-Htz1\(39647\).pdf                                

sudo cp ../labstocks.bck2/antibody_files/23.Anti-H2AFZ\(ab4626\).pdf                  raw_dirs/antibodies/23/Anti-H2AFZ\(ab4626\).pdf                              

sudo cp ../labstocks.bck2/antibody_files/24.Anti-LexA-DBD\(39185\).pdf                raw_dirs/antibodies/24/Anti-LexA-DBD\(39185\).pdf                            

sudo cp ../labstocks.bck2/antibody_files/2.Anti-Myc\(06-340\).pdf                     raw_dirs/antibodies/2/Anti-Myc\(06-340\).pdf                                 

sudo cp ../labstocks.bck2/antibody_files/3.Anti-H3\(ab10799\).pdf                     raw_dirs/antibodies/3/Anti-H3\(ab10799\).pdf                                 

sudo cp ../labstocks.bck2/antibody_files/4.Anti-H3\(ab24834\).pdf                     raw_dirs/antibodies/4/Anti-H3\(ab24834\).pdf                                 

sudo cp ../labstocks.bck2/antibody_files/5.Anti-H3K4me2\(ab7766\).pdf                 raw_dirs/antibodies/5/Anti-H3K4me2\(ab7766\).pdf                             

sudo cp ../labstocks.bck2/antibody_files/6.Anti-H3K4me3\(ab8580\).pdf                 raw_dirs/antibodies/6/Anti-H3K4me3\(ab8580\).pdf                             

sudo cp ../labstocks.bck2/antibody_files/7.Anti-H3K27me3\(07-449\).pdf                raw_dirs/antibodies/7/Anti-H3K27me3\(07-449\).pdf                            

sudo cp ../labstocks.bck2/antibody_files/8.Anti-H4K12ac\(06-761\).pdf                 raw_dirs/antibodies/8/Anti-H4K12ac\(06-761\).pdf                             

sudo cp ../labstocks.bck2/antibody_files/9.Beta-Actin-AC74\(A2228\).pdf               raw_dirs/antibodies/9/Beta-Actin-AC74\(A2228\).pdf                           

sudo chmod -R a+r raw_dirs

sudo chown -R www-data:www-data raw_dirs

# upload gene_synthesis_reports_pGY247.zip and gene_synthesis_reports_pGY248.zip

scp -r stainer:Desktop/LBMC/projects/plasmapper/src/plasmid_files labstocks

vi labstocks/connect_entry.php

sudo cp -r labstocks /var/www/

sudo chmod 440 /var/www/labstocks/connect_entry.php 

sudo chown www-data:www-data /var/www/labstocks/connect_entry.php

sudo chown -R www-data:www-data /var/www/labstocks/plasmid_files

sudo chown -R www-data:www-data /var/www/labstocks/raw_dirs

sudo touch /var/www/labstocks/formatdb.log

sudo chown www-data:www-data /var/www/labstocks/formatdb.log

Even in edit mode, users are not granted permission to directly edit a plasmid 

sequence, nor the URL to the plasmid sequence file. If a new sequence must be 

entered instead of the current one, users must upload a new sequence file, in 

.gb or .gb.gz format. MyLabStocks then automatically reads the file and update 

the sequence field and the URL. This ensures consistency between URL, sequence 

and the file itself.

TODO

====

  - Upload a .gb file, gzip it on fly for plasmids.

  - Bug with plasmid 246, having a look on log file: tail -f /var/log/tomcat6/catalina.out

  - Add persistence on advanced search form conditions.

  - Remove file field for antibodies

  - More error msg when an uploaded file is too big. (>2Mo).

<?php

session_start ();

require("headers.php");

if (! defined('PHP_EOL')) {

	define('PHP_EOL', strtoupper(substr(PHP_OS, 0, 3) == 'WIN') ? "\r\n"

			: strtoupper(substr(PHP_OS, 0, 3) == 'MAC') ? "\r" : "\n");

}

$hn = SERVEUR;

$un = NOM;

$pw = PASSE;

$db = BASE;

$submit        = "Submit";

$options       = 1;

$baseFilename  = $tb;

$pageTitle     = $tb;

if (@$_REQUEST["action"] == "CHANGE_TB") {

  $_SESSION["tb"] = $_REQUEST["tb"];

} else {

  if (!isset($_SESSION["tb"])) {

    $_SESSION["tb"] = "lab_members";

  }

}

$tb = $_SESSION["tb"];

$phpExtension = '.php';

if (isset($baseFilename) && $baseFilename != '') {

	$phpFile = $baseFilename.$phpExtension;

	//$contentFile = $baseFilename.'Content.inc';

	$contentFile = $baseFilename.'.php';

} elseif (isset($tb)) {

	$phpFile = $tb.$phpExtension;

	//$contentFile = $tb.'Content.inc';

	$contentFile = $tb.'.php';

} else {

	$phpFile = 'index'.$phpExtension;

	//$contentFile = 'Content.inc';

	$contentFile = 'phpMyEdit-content.php';

}

$buffer = '';

function echo_buffer($x)

{

	global $buffer;

	$buffer .= $x.PHP_EOL;

}

function check_constraints($tb,$fd)

{

  $query    = "show create table $tb";

  $result   = mysql_query($query);

  $tableDef = preg_split('/\n/',mysql_result($result,0,1));

  $constraint_arg="";

  while (list($key,$val) = each($tableDef)) {

    $words=preg_split("/[\s'`()]+/", $val);

    if ($words[1] == "CONSTRAINT" && $words[6]=="REFERENCES") {

      if ($words[5]==$fd) {

        $constraint_arg="  'values' => array(\n".

                        "    'table'  => '$words[7]',\n".

                        "    'column' => '$words[8]'\n".

                        "  ),\n";

      }

    }

  }

  return $constraint_arg;

}

$self = basename($_SERVER['PHP_SELF']);

$dbl  = @mysql_pconnect($hn, $un, $pw);

$select_tb = "<form action='admin.php' method='POST'>";

$select_tb .= "<input type='hidden' name='action' value='CHANGE_TB'/>";

$select_tb .= "<select name='tb'>";

$tbs     = @mysql_list_tables($db, $dbl);

$num_tbs = @mysql_num_rows($tbs);

for ($j = 0; $j < $num_tbs; $j++) {

	$tb_choice = @mysql_tablename($tbs, $j);

  $tb_choice = htmlspecialchars($tb_choice);

  $checked = $tb_choice == $tb ? ' selected="selected" ' : '';

	$select_tb .= "<option value='$tb_choice' $checked>$tb_choice</option>";

}

$select_tb .= "</select>";

$select_tb .= "<input type='Submit' name='Submit' value='Show this table' />";

$select_tb .= "</form>";

echo $select_tb;

@mysql_select_db($db);

$tb_desc = @mysql_query("DESCRIBE $tb");

$fds     = @mysql_list_fields($db,$tb,$dbl);

$j = 0; 

$fd = @mysql_field_name($fds, $j);

$ff = @mysql_field_flags($fds, $j);

if (!stristr($ff, 'primary_key')) {

  echo "ERROR, first field is not a primary_key.";

  exit();

}

$id = htmlspecialchars($fd);

{

	echo_buffer("

// MySQL host name, user name, password, database, and table

\$opts['hn'] = '$hn';

\$opts['un'] = '$un';

\$opts['pw'] = '$pw';

\$opts['db'] = '$db';

\$opts['tb'] = '$tb';

// Name of field which is the unique key

\$opts['key'] = '$id';

// Type of key field (int/real/string/date etc.)");

	if ($id == '') {

		echo_buffer("\$opts['key_type'] = '';");

	} else {

		$fds = @mysql_list_fields($db,$tb,$dbl);

		for ($j = 0; ($fd = @mysql_field_name($fds, $j)) != ''; $j++) {

			if ($fd == $id) {

				echo_buffer("\$opts['key_type'] = '".@mysql_field_type($fds, $j)."';");

				break;

			}

		}

	}

	echo_buffer("

// Sorting field(s)

\$opts['sort_field'] = array('$id');

// Options you wish to give the users

// A - add,  C - change, P - copy, V - view, D - delete,

// F - filter, I - initial sort suppressed

\$opts['options'] = \$privopt;

");

	@mysql_select_db($db);

	$tb_desc = @mysql_query("DESCRIBE $tb");

	$fds     = @mysql_list_fields($db, $tb, $dbl);

	$num_fds = @mysql_num_fields($fds);

	$ts_cnt  = 0;

	for ($k = 0; $k < $num_fds; $k++) {

		$fd = mysql_field_name($fds,$k);

		$fm = mysql_fetch_field($fds,$k);

		$fn = strtr($fd, '_-.', '   ');

		$fn = preg_replace('/(^| +)id( +|$)/', '\\1ID\\2', $fn); // uppercase IDs

		$fn = ucfirst($fn);

		$row = @mysql_fetch_array($tb_desc);

		echo_buffer('$opts[\'fdd\'][\''.$fd.'\'] = array('); // )

		echo_buffer("  'name'     => '".str_replace('\'','\\\'',$fn)."',");

		$auto_increment = strstr($row[5], 'auto_increment') ? 1 : 0;

		if (substr($row[1],0,3) == 'set') {

			echo_buffer("  'select'   => 'M',");

		} else {

			echo_buffer("  'select'   => 'T',");

		}

		if ($auto_increment) {

			echo_buffer("  'options'  => 'AVCPDR', // auto increment");

		}

		// timestamps are read-only

		else if (@mysql_field_type($fds, $k) == 'timestamp') {

			if ($ts_cnt > 0) {

				echo_buffer("  'options'  => 'AVCPD',");

			} else { // first timestamp

				echo_buffer("  'options'  => 'AVCPDR', // updated automatically (MySQL feature)");

			}

			$ts_cnt++;

		}

		echo_buffer("  'maxlen'   => ".@mysql_field_len($fds,$k).',');

		// blobs -> textarea

		if (@mysql_field_type($fds,$k) == 'blob') {

			echo_buffer("  'textarea' => array(");

			echo_buffer("    'rows' => 5,");

			echo_buffer("    'cols' => 50),");

		}

		// SETs and ENUMs get special treatment

		if ((substr($row[1],0,3) == 'set' || substr($row[1],0,4) == 'enum')

				&& ! (($pos = strpos($row[1], '(')) === false)) {

			$indent = str_repeat(' ', 18);

			$outstr = substr($row[1], $pos + 2, -2);

			$outstr = explode("','", $outstr);

			$outstr = str_replace("''", "'",  $outstr);

			$outstr = str_replace('"', '\\"', $outstr);

			$outstr = implode('",'.PHP_EOL.$indent.'"', $outstr);

			echo_buffer("  'values'   => array(".PHP_EOL.$indent.'"'.$outstr.'"),');

		}

		// automatic support for Default values

		if ($row[4] != '' && $row[4] != 'NULL') {

			echo_buffer("  'default'  => '".$row[4]."',");

		} else if ($auto_increment) {

			echo_buffer("  'default'  => '0',");

		}

		// check for table constraints

		$outstr = check_constraints($tb, $fd);

		if ($outstr != '') {

			echo_buffer($outstr);

		}

		echo_buffer("  'sort'     => true");

		//echo_buffer("  'nowrap'   => false,");

		echo_buffer(');');

	}

  eval($buffer);

}

require("footers.php");

?>

// TRIGGER

// Before displaying the view page

require("footers.php");

?>

define ('LABSTOCK_SERVER', "http://" . $_SERVER["HTTP_HOST"] . "/labstocks/");

<?php

// TRIGGER

$opts['triggers']['select']['pre'][] = 'last_trigger.MVC.php';

$opts['triggers']['update']['pre'][] = 'last_trigger.MVC.php';

array_unshift($opts['triggers']['select']['pre'], 'raw_dir.MVC.php');

array_unshift($opts['triggers']['update']['pre'], 'raw_dir.MVC.php');

// Now important call to phpMyEdit

require_once 'phpMyEdit.class.php';

$pme_instance = new phpMyEdit($opts);

if (!array_key_exists("PME_sys_operation", $_REQUEST)) {

  $tmp_array = $pme_instance->fds;

  if ($tb == "strains") {

    array_unshift($tmp_array, "Genotype");

  }

  $json_cols = json_encode($tmp_array);

  $adv_search = <<<EOD

    <div id="adv_search">

    <form action="">

    <table id="adv_search_table">

    </table>

    <input type="hidden" name="action" value="ADV_SEARCH"/>

    <input type="submit" value="Search"/>

    </form>

    </div>  

    <script type="text/javascript"> 

    nb_filter = 0;

    function filter() {

      var self = this;

      cols = $json_cols;

      conds = ["LIKE", "=", "<", "<=", ">=", ">", "!="];

      ops = ["AND", "OR"];

      table = document.getElementById("adv_search_table");

      this.tmp_tr = document.createElement("tr");

      table.appendChild(this.tmp_tr);

      tmp_td = document.createElement("td");

      if (nb_filter != 0) {

        tmp_select = document.createElement("select")

        tmp_select.setAttribute('name', 'op' + '_' + nb_filter)

        ops.forEach(function(op) {

          tmp_option = document.createElement("option");

          tmp_option.appendChild(document.createTextNode(op));

          tmp_select.appendChild(tmp_option);

          });

        tmp_td.appendChild(tmp_select);

      }

      this.tmp_tr.appendChild(tmp_td)

      tmp_select = document.createElement("select")

      tmp_select.setAttribute('name', 'col' + '_' + nb_filter)

      cols.forEach(function(col) {

        tmp_option = document.createElement("option");

        tmp_option.appendChild(document.createTextNode(col));

        tmp_select.appendChild(tmp_option);

        });

      tmp_td = document.createElement("td");

      tmp_td.appendChild(tmp_select);

      this.tmp_tr.appendChild(tmp_td)

      tmp_select = document.createElement("select")

      tmp_select.setAttribute('name', 'cond' + '_' + nb_filter)

      conds.forEach(function(cond) {

        tmp_option = document.createElement("option");

        tmp_option.appendChild(document.createTextNode(cond));

        tmp_select.appendChild(tmp_option);

      });

      tmp_td = document.createElement("td");

      tmp_td.appendChild(tmp_select);

      this.tmp_tr.appendChild(tmp_td)

      tmp_input = document.createElement("input")

      tmp_input.setAttribute('name', 'input' + '_' + nb_filter)

      tmp_td = document.createElement("td");

      tmp_td.appendChild(tmp_input);

      this.tmp_tr.appendChild(tmp_td)

      tmp_td = document.createElement("td");

      tmp_td.innerHTML = "<input type='button' onclick='new filter();return false;' value='+'/>"

      if (nb_filter != 0) {      

        tmp_input = document.createElement("input");

        tmp_input.setAttribute('value', '-');

        tmp_input.setAttribute('type', 'button');

        tmp_input.setAttribute('value', '-');

        tmp_input.onclick = function(){self.tmp_tr.parentNode.removeChild(self.tmp_tr); return false;};

        tmp_td.appendChild(tmp_input);

      }

      this.tmp_tr.appendChild(tmp_td);

      nb_filter++;

    }

    new filter();

    </script>

EOD;

  $to_be_pre_list_content .= $adv_search;

}

// echo "<pre>";

// print_r(json_encode($pme_instance->fds));

// echo "</pre>";

echo <<<EOD

<div id="to_be_pre_list">

  $to_be_pre_list_content

</div>

EOD;

?>

<div id="post_list"></div>

<script type="text/javascript"> 

q = document.getElementById("to_be_post_list");

if (q != null) {

  o = document.getElementById("post_list");

  o.appendChild(q.parentNode.removeChild(q));

}

q = document.getElementById("to_be_pre_list");

if (q != null) {

  o = document.getElementById("pre_list");

  o.appendChild(q.parentNode.removeChild(q));

}

</script>

    <li id="pip_stock"><a href="pip_stock.php"> Pipets </a></li>

    <li id="pip_history"><a href="pip_history.php"> Pipet History </a></li>

$to_be_post_list_content = "";

$to_be_pre_list_content = "";

// print($_SERVER["SCRIPT_FILENAME"]);

$tb = array_shift(split("\.php", array_pop(split("/", $_SERVER["SCRIPT_FILENAME"]))));

require_once ("lib/session.lib.php");

if (!(in_array($tb, array("home", "")))) {

  // authentification

  CleanOldSessions($connexion);

  $session = control_access ($tb.".php", $_POST, session_id(), $connexion);

  if (!is_object($session)) {

  	exit;

  }

  // According to login:

  // Define priviledge options

  // to pass to phpMyEdit

  //

  //check that visitor is allowed to use this table

  if ($tb == "admin" && $session->mode != "super") {

    echo "<p>Sorry, your session is not granted access to admin panel. Please logout and try again with appropriate login...</p>";

    exit;

  } else if ($session->target_table != $tb && $session->target_table != "all") {

    echo "<p>Sorry, your session is not granted access to table <B> $tb </B> in <B>$session->mode</B> mode (login must be <b>$session->mode$tb</b>). Please logout and try again with appropriate login...</p>";

    exit;

  }

  //define priv options and display warning accordingly

  if ($session->login == "superuser"){

  	$privopt = 'ACPVDF';

  	$colorband = "red";

  	$messageband = '<blink>WARNING</bink>: You are in <I><B> SUPERUSER </I></B> mode, at your own risk.';

  } else if ($session->mode == "view"){

  	$privopt = 'VF';

  	$colorband = "#00ff00";

  	$messageband = "You are safely in VIEW mode";

  } else if ($session->mode == "add"){

  	$privopt = 'APVF';

  	$colorband = "orange";

  	$messageband = 'You are in <I><B> ADD </I></B> mode, please logout after you additions';

  } else if ($session->mode == "edit"){

  	$privopt = 'ACPVDF';

  	$colorband = "rgb(250,0,255)";

  	$messageband = 'IMPORTANT: You are in <I><B> EDIT </I></B> mode, please logout after editing.';

  } else{

  	$privopt = '';

  	$colorband = "grey";

  }

  echo '<style type="text/css"> ';

  echo	"h4 {background-color: $colorband }";

  echo '</style>';

  echo "<h4> $messageband </h4>";

  echo "<HR>";

// Fix a problem displaying

// symbols (such as delta)

mysql_query("SET NAMES 'UTF8'", $connexion);

// // Include My own MVC (FCh.)

// $mvc_filename = $tb . ".MVC.php";

// if (file_exists($mvc_filename)) {

//   require($mvc_filename);

// } 

// Number of records to display on the screen

// Value of -1 lists all records in a table

$opts['inc'] = 15;

// Number of lines to display on multiple selection filters

$opts['multiple'] = '4';

// Navigation style: B - buttons (default), T - text links, G - graphic links

// Buttons position: U - up, D - down (default)

$opts['navigation'] = 'UDBG';

// Display special page elements

$opts['display'] = array(

	'form'  => true,

	'query' => true,

	'sort'  => true,

	'time'  => true,

	'tabs'  => true

);

// Set default prefixes for variables

$opts['js']['prefix']               = 'PME_js_';

$opts['dhtml']['prefix']            = 'PME_dhtml_';

$opts['cgi']['prefix']['operation'] = 'PME_op_';

$opts['cgi']['prefix']['sys']       = 'PME_sys_';

$opts['cgi']['prefix']['data']      = 'PME_data_';

/* Get the user's default language and use it if possible or you can

   specify particular one you want to use. Refer to official documentation

   for list of available languages. */

$opts['language'] = $_SERVER['HTTP_ACCEPT_LANGUAGE'] . '-UTF8';

?>

<div id="pre_list"></div>

<?php

// MVC for ADV_SEARCH

if (array_key_exists("action", $_REQUEST)) {

  if ($_REQUEST["action"] == "ADV_SEARCH") {

    $fltr = "";

    $cols = preg_filter("/col_/","", array_keys($_REQUEST));

    foreach ($cols as $index) {

      if ($index != 0) {

        $fltr .= " " . $_REQUEST["op_$index"];

      }

      if ($_REQUEST["col_$index"] == "Genotype") {

        $k = $_REQUEST["input_$index"];

        $fltr .= " (`locus1` LIKE '%$k%' OR `locus2` LIKE '%$k%' OR `locus3` LIKE '%$k%' OR `locus4` LIKE '%$k%' OR `locus5` LIKE '%$k%' OR `ADE2` LIKE '%$k%' OR `HIS3` LIKE '%$k%' OR `LEU2` LIKE '%$k%' OR `LYS2` LIKE '%$k%' OR `MET15` LIKE '%$k%' OR `TRP1` LIKE '%$k%' OR `URA3` LIKE '%$k%' OR `HO_` LIKE '%$k%' OR `Cytoplasmic_Character` LIKE '%$k%' OR `extrachromosomal_plasmid` LIKE '%$k%')";

      } else {

        $fltr .= " " . $_REQUEST["col_$index"];

        $fltr .= " " . $_REQUEST["cond_$index"];

        if ($_REQUEST["cond_$index"] == "LIKE") {

          $fltr .= " '%" . $_REQUEST["input_$index"] . "%'";                    

        } else {

          $fltr .= " '" . $_REQUEST["input_$index"] . "'";          

        }

      }

    }

    $opts["filters"] = $fltr;

  }

?>

  `-:-.   ,-;"`-:-.   ,-;"`-:-.   ,-;"`-:-.   ,-;"

     `=`,'=/     `=`,'=/     `=`,'=/     `=`,'=/

       y==/        y==/        y==/        y==/

     ,=,-<=`.    ,=,-<=`.    ,=,-<=`.    ,=,-<=`.

  ,-'-'   `-=_,-'-'   `-=_,-'-'   `-=_,-'-'   `-=_

<?php

$to_be_post_list = <<<EOD

<div id="to_be_post_list">

  $to_be_post_list_content

</div>

EOD;

echo $to_be_post_list;

?>

<?php

// Base sur Ph. Rigaux, OReilly 3e edition.

// table visitors (login/pwd)

// table websession

// Les privileges de labmember_add sont:

// SELECT sur visitors,

// et ALL sur sessionWeb

require_once 'lib/form.cls.php';

function execQry ($qry, $bd)

{

  $result = mysql_query($qry, $bd);

  if (!$result)

  {

    echo "error in execQry ". mysql_error ($db);

    exit;

  }

  else

   return $result;

}

function CleanOldSessions ($bd)

{

  //erase sessions outdated since 15 days

  $tooOld = date ("U") - 1296000;

  $qry = "DELETE FROM websession WHERE time_limit < $tooOld";

  $resultat = execQry ($qry, $bd);

}

// uses form class from "form.cls.php"

function LoginForm ($nom_script, $login_default = "view")

{

  $form = new form ();

  $form -> openForm (array ('action' => "$nom_script", 'id' => 'LoginForm'));

  $form -> openFieldset (array ('style' => 'border:1px dotted red; width: 300px;'));

  $form -> addLegend ('Please Login');

  $form -> addInput ('text', array ('id' => 'Login', 'value' => "$login_default", 'name' => 'visitor_login', 'test' => 'test'));

  $form -> addLabel (' login', array ('for' => 'MyText', 'style' => 'margin: 5px;'));

  $form -> addAnything ('<br /><br />');

  $form -> addInput ('password', array ('id' => 'Pwd', 'value' => '', 'name' => 'visitor_pwd', 'test' => 'test'));

  $form -> addLabel (' password', array ('for' => 'MyText', 'style' => 'margin: 5px;'));

  $form -> addAnything ('<br /><br />');

  $form -> addInput ('submit', array ('id' => 'MyButton', 'value' => 'Submit', 'test' => 'test'));

  $form -> closeFieldset ();

  $form -> closeForm ();  

  echo '<br><I>To login, cookies must be enabled on your browser</I><br><br>';

  echo '<div >';//style="border: 1px solid darkgrey; text-align: center; width: 310px;">';

  // on l'affiche

  echo $form;

  echo '</div>';

  echo '</body>';

  echo '</html>';

}

function get_visitor ($login, $bd) {

  $log = substr($login, 0, 3);

  $qry = "SELECT * FROM visitors WHERE `login` LIKE '%$log%'";

  $result = mysql_query($qry, $bd);

  while($vis = mysql_fetch_object($result)) {

    if ($vis->login == substr($login, 0, strlen($vis->login))) {

      if ($vis->target_table != "all"){

        $vis->target_table = substr($login, strlen($vis->login));        

      }

      return $vis;

    }

  }

  return NULL;

}

function create_session ($bd, $login, $pwd, $id_session){

  $visitor = get_visitor ($login, $bd);

    //L'internaute existe-t-il?

  if (is_object($visitor)) {

    //verif du mot de passe

    if ($visitor->pwd == md5($pwd)) {

      // on insere une session de trente minutes dans table websession

      $time_limit = date ("U") + 1800;

      $insSession = "INSERT INTO websession (id_session, login, "

        . "time_limit, target_table, "

        . "mode) VALUES ('$id_session', '$login', '$time_limit', '$visitor->target_table', '$visitor->mode')";

      $resultat = execQry ($insSession, $bd);

      return TRUE;

    } else {

      echo "<B> Sorry, incorrect password for $login !</B><P>";

      return FALSE;

    }

  } else {

    echo "<B>Sorry, $login is not a registered login!</B><P>";

    return FALSE;

  }

}

//check session validity, destroy if not

function is_valid_session ($session, $bd) {

  //is time over?

  $now = date ("U");

  if ($session->time_limit < $now) {

    session_destroy();

    $destr = "DELETE FROM websession WHERE id_session='$session->id_session'";

    $resultat = execQry ($destr, $bd);    

  } else { //session is valid

   return TRUE;

  }

}

function get_session ($id_session, $bd) {

  $qry = "SELECT * FROM websession WHERE `id_session` = '$id_session'";

  while($sess = mysql_fetch_object(execQry ($qry, $bd))) {

    if ($sess->id_session == $id_session) {

      return $sess;

    }

  }

  return NULL;

}

// main function for access control 

function control_access ($nom_script, $infos_login, $id_session, $bd) {

  //recherche la session

  $session_courante = get_session ($id_session, $bd);

  //cas 1: la session existe, on verifie sa validite

  if (is_object($session_courante)) {

     // la session existe, est-elle valide?

     if (is_valid_session ($session_courante, $bd)) {

        // on renvoie l'objet session

        return $session_courante;

     } else {

        echo "<B> Your session is not (or no longer) valid.<P></B>\n";

     }

  }  

  // Cas 2.a: La session n'existe pas mais un login et pwd ont ete fournis

  if (isset($infos_login['visitor_login']) & isset($infos_login['visitor_pwd'])) {

    // Les login/pwd sont-ils corrects?

    if (create_session ($bd, $infos_login['visitor_login'], $infos_login['visitor_pwd'], $id_session)) {

      // on renvoie l'object session

      return get_session ($id_session, $bd);

    } else {

        echo "<B> Identification failed.<P></B>\n";

    }

  }  

  // Cas 2.b: La session n'existe pas 

  // et il faut afficher le formulaire d'identification

  LoginForm ($nom_script);

}

?>

session_start();

require_once ("lib/session.lib.php");

if (!$connexion) {

if (!mysql_select_db (BASE, $connexion)) {

session_destroy();

header("Location: home.php");

require("footers.php");

?>

require("footers.php");

?>

<?php

// a Trigger to display pipet info

$allevents = $this->myQuery("SELECT * FROM ".$this->tb);

$allpipets = $this->myQuery("SELECT * FROM pip_stock");

/* there must be a more straightforward way to do this

 * but this seems to work

 */

// reach the event displayed

$foundevent = 0;

while(!$foundevent && $event = mysql_fetch_object($allevents)){

	if ($event->ID == $this->rec)

		$foundevent = 1;

}

// record Serial Number of the pipet considered

if ($event){

  $SerialNum = $event->Serial_Number ;

}

// reach the pipet displayed

$foundpipet = 0;

while(!$foundpipet && $pipet = mysql_fetch_object($allpipets)){

	if ($pipet->Serial_Number == $SerialNum)

		$foundpipet = 1;

}

if ($pipet){

   // print pipet infos

   echo " Pipet : ".

        $pipet->Marque . " " .

	$pipet->Type . " " .

	"<BR>" .

	"Serial Number: ".

        $pipet->Serial_Number . "<BR>". "<BR>";

}

?>

<?php

session_start ();

require("headers.php");

/*

 * IMPORTANT NOTE: This generated file contains only a subset of huge amount

 * of options that can be used with phpMyEdit. To get information about all

 * features offered by phpMyEdit, check official documentation. It is available

 * online and also for download on phpMyEdit project management page:

 *

 * http://platon.sk/projects/main_page.php?project_id=5

 *

 * This file was generated by:

 *

 *                    phpMyEdit version: unknown

 *       phpMyEdit.class.php core class: 1.204

 *            phpMyEditSetup.php script: 1.50

 *              generating setup script: 1.50

 */

//************************/

//

// Update list of pipet Users

//

//************************/

mysql_query("DELETE FROM pip_users", $connexion);

mysql_query("INSERT INTO pip_users (User) SELECT id FROM lab_members", $connexion);

mysql_query("INSERT INTO pip_users (User) SELECT User FROM pip_generic_user", $connexion);

mysql_query("DELETE FROM pip_users WHERE User IN (SELECT User FROM pip_nonusers)", $connexion);

/*************************/

//

// Pass phpMyEdit options

//

/*************************/

$opts['dbh'] = $connexion;

$opts['tb'] = $tb;

// Name of field which is the unique key

$opts['key'] = 'ID';

// Type of key field (int/real/string/date etc.)

$opts['key_type'] = 'int';

// Sorting field(s)

$opts['sort_field'] = array('ID');

// Number of records to display on the screen

// Value of -1 lists all records in a table

$opts['inc'] = 15;

// Options you wish to give the users

// A - add,  C - change, P - copy, V - view, D - delete,

// F - filter, I - initial sort suppressed

$opts['options'] = $privopt;

// Number of lines to display on multiple selection filters

$opts['multiple'] = '4';

// Navigation style: B - buttons (default), T - text links, G - graphic links

// Buttons position: U - up, D - down (default)

$opts['navigation'] = 'UDBG';

// Display special page elements

$opts['display'] = array(

	'form'  => true,

	'query' => true,

	'sort'  => true,

	'time'  => true,

	'tabs'  => true

);

// Set default prefixes for variables

$opts['js']['prefix']               = 'PME_js_';

$opts['dhtml']['prefix']            = 'PME_dhtml_';

$opts['cgi']['prefix']['operation'] = 'PME_op_';

$opts['cgi']['prefix']['sys']       = 'PME_sys_';

$opts['cgi']['prefix']['data']      = 'PME_data_';

/* Get the user's default language and use it if possible or you can

   specify particular one you want to use. Refer to official documentation

   for list of available languages. */

$opts['language'] = $_SERVER['HTTP_ACCEPT_LANGUAGE'] . '-UTF8';

/* Table-level filter capability. If set, it is included in the WHERE clause

   of any generated SELECT statement in SQL query. This gives you ability to

   work only with subset of data from table.

$opts['filters'] = "column1 like '%11%' AND column2<17";

$opts['filters'] = "section_id = 9";

$opts['filters'] = "PMEtable0.sessions_count > 200";

*/

/* Field definitions

Fields will be displayed left to right on the screen in the order in which they

appear in generated list. Here are some most used field options documented.

['name'] is the title used for column headings, etc.;

['maxlen'] maximum length to display add/edit/search input boxes

['trimlen'] maximum length of string content to display in row listing

['width'] is an optional display width specification for the column

          e.g.  ['width'] = '100px';

['mask'] a string that is used by sprintf() to format field output

['sort'] true or false; means the users may sort the display on this column

['strip_tags'] true or false; whether to strip tags from content

['nowrap'] true or false; whether this field should get a NOWRAP

['select'] T - text, N - numeric, D - drop-down, M - multiple selection

['options'] optional parameter to control whether a field is displayed

  L - list, F - filter, A - add, C - change, P - copy, D - delete, V - view

            Another flags are:

            R - indicates that a field is read only

            W - indicates that a field is a password field

            H - indicates that a field is to be hidden and marked as hidden

['URL'] is used to make a field 'clickable' in the display

        e.g.: 'mailto:$value', 'http://$value' or '$page?stuff';

['URLtarget']  HTML target link specification (for example: _blank)

['textarea']['rows'] and/or ['textarea']['cols']

  specifies a textarea is to be used to give multi-line input

  e.g. ['textarea']['rows'] = 5; ['textarea']['cols'] = 10

['values'] restricts user input to the specified constants,

           e.g. ['values'] = array('A','B','C') or ['values'] = range(1,99)

['values']['table'] and ['values']['column'] restricts user input

  to the values found in the specified column of another table

['values']['description'] = 'desc_column'

  The optional ['values']['description'] field allows the value(s) displayed

  to the user to be different to those in the ['values']['column'] field.

  This is useful for giving more meaning to column values. Multiple

  descriptions fields are also possible. Check documentation for this.

*/

$opts['fdd']['ID'] = array(

  'name'     => 'ID',

  'select'   => 'N',

  'options'  => 'LAVCPDR', // auto increment

  'maxlen'   => 10,

  //'default'  => '0',

  'sort'     => true

);

$opts['fdd']['Date'] = array(

  'name'     => 'Date',

  'options'  => 'LFAVCPD',

  'select'   => 'N',

  'maxlen'   => 10,

  'sort'     => true,

  'default'  => date("Y-m-d", strtotime("now"))

);

$opts['fdd']['Event_Type'] = array(

  'name'     => 'Type of Event',

  'select'   => 'D',

  'maxlen'   => 30,

  'default'  => 'Misc',

  'values'   => array(

  	'table'  => 'pip_events',

	'column' => 'Events'),

  'sort'     => true

);

$opts['fdd']['Serial_Number'] = array(

  'name'     => 'Pipet Serial Number',

  'select'   => 'D',

  'maxlen'   => 30,

  //'default'  => '0',

  'values'   => array(

  	'table'  => 'pip_stock',

	'column' => 'Serial_Number'),

  'sort'     => true

);

$opts['fdd']['Usage_fromNowOn'] = array(

  'name'     => 'Usage after this',

  'select'   => 'D',

  'maxlen'   => 25,

  'sort'     => true,

  'default'  => 'Misc',

  'values'   => array(

  	'table'  => 'pip_usage',

	'column' => 'Usage')

);

$opts['fdd']['Owner_fromNowOn'] = array(

  'name'     => 'Owner after this',

  'select'   => 'D',

  'maxlen'   => 25,

  'sort'     => true,

  'values'   => array(

  	'table'  => 'pip_users',

	'column' => 'User')

);

$opts['fdd']['Comments'] = array(

  'name'     => 'Comments',

  'select'   => 'T',

  'maxlen'   => 1000000000, //4294967295,

  'textarea' => array(

  	'rows' => 5,

  	'cols' => 50),

  'sort'     => true

);

// TRIGGER

// Before displaying the view page

$opts['triggers']['select']['pre'][]    = 'pip_history.TSP.php';

require("footers.php");

?>

<?php

session_start ();

require("headers.php");

/*

 * IMPORTANT NOTE: This generated file contains only a subset of huge amount

 * of options that can be used with phpMyEdit. To get information about all

 * features offered by phpMyEdit, check official documentation. It is available

 * online and also for download on phpMyEdit project management page:

 *

 * http://platon.sk/projects/main_page.php?project_id=5

 *

 * This file was generated by:

 *

 *                    phpMyEdit version: unknown

 *       phpMyEdit.class.php core class: 1.204

 *            phpMyEditSetup.php script: 1.50

 *              generating setup script: 1.50

 */

/*************************/

//

// Pass phpMyEdit options

//

/*************************/

$opts['dbh'] = $connexion;

$opts['tb'] = $tb;

// Name of field which is the unique key

$opts['key'] = 'ID';

// Type of key field (int/real/string/date etc.)

$opts['key_type'] = 'int';

// Sorting field(s)

$opts['sort_field'] = array('ID');

// Number of records to display on the screen

// Value of -1 lists all records in a table

$opts['inc'] = 15;