Révision 30 src/lsm_contour.cpp

lsm_contour.cpp (revision 30)
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  //ckeck filename and read image
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  string filename=argv[1];
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  CImg<unsigned char> img_prev;
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   float tailleVoxel[3] = {0};// resolution initialisation
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  if(filename.compare(filename.size()-4,4,".inr")==0)
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    {
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      img_prev.load(filename.c_str());
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      img_prev.get_load_inr(filename.c_str(),tailleVoxel); // reads resolution
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    }
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  else if(filename.compare(filename.size()-7,7,".inr.gz")==0)
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    {
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      img_prev.load_gzip_external(filename.c_str());
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      string oldname = filename;
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      filename.erase(filename.size()-3);
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      string zip="gunzip -c "+oldname+" > "+filename;
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      if(system(zip.c_str())); // decompress image file
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      img_prev.load(filename.c_str()); //read image
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      img_prev.get_load_inr(filename.c_str(),tailleVoxel); // read resolution
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      zip="rm "+filename;
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      if(system(zip.c_str())); //removes decompressed image
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    }
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  else
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    {cout<<"!! wrong file extension : "<<filename<<endl;
......
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  float perUp=atof(argv[7]);
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  float perDown=atof(argv[8]);
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  float tailleVoxel[3] = {0.195177,0.195177,0.195177};


  		





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  //other paremeters


  		





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  int systout;


  		





  
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  cout<<"Voxel size : ("<<tailleVoxel[0]<<","<<tailleVoxel[1]<<","<<tailleVoxel[2]<<")"<<endl;


  		





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  //-------------------------------------------Names and directories


  		





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  //new name with arguments


  		





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  string ar2=argv[2];


  		





  ......




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  string outputdir=filename;


  		





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  outputdir.erase(filename.size()-4);


  		





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  string mkdir="mkdir -p "+outputdir;


  		





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  systout=system(mkdir.c_str()); 


  		





  
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  if(system(mkdir.c_str())); 


  		





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  string filename_txt=outputdir+"/"+filename;


  		





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  filename_txt.erase(filename_txt.size()-4);


  		





  ......




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	  segSave.save_inr(result_name.c_str(),tailleVoxel);


  		





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	  segSave.assign();


  		





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	  string zip="gzip -f "+result_name;


  		





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	  systout=system(zip.c_str());


  		





  
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	  if(system(zip.c_str()));


  		





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	}


  		





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      it+=1;


  		





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    }


  		












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