| 56 |
56 |
//ckeck filename and read image
|
| 57 |
57 |
string filename=argv[1];
|
| 58 |
58 |
CImg<unsigned char> img_prev;
|
|
59 |
|
|
60 |
float tailleVoxel[3] = {0};// resolution initialisation
|
|
61 |
|
| 59 |
62 |
if(filename.compare(filename.size()-4,4,".inr")==0)
|
| 60 |
63 |
{
|
| 61 |
|
img_prev.load(filename.c_str());
|
|
64 |
img_prev.get_load_inr(filename.c_str(),tailleVoxel); // reads resolution
|
| 62 |
65 |
}
|
| 63 |
66 |
else if(filename.compare(filename.size()-7,7,".inr.gz")==0)
|
| 64 |
67 |
{
|
| 65 |
|
img_prev.load_gzip_external(filename.c_str());
|
|
68 |
string oldname = filename;
|
| 66 |
69 |
filename.erase(filename.size()-3);
|
|
70 |
string zip="gunzip -c "+oldname+" > "+filename;
|
|
71 |
if(system(zip.c_str())); // decompress image file
|
|
72 |
img_prev.load(filename.c_str()); //read image
|
|
73 |
img_prev.get_load_inr(filename.c_str(),tailleVoxel); // read resolution
|
|
74 |
zip="rm "+filename;
|
|
75 |
if(system(zip.c_str())); //removes decompressed image
|
|
76 |
|
|
77 |
|
| 67 |
78 |
}
|
| 68 |
79 |
else
|
| 69 |
80 |
{cout<<"!! wrong file extension : "<<filename<<endl;
|
| ... | ... | |
| 93 |
104 |
float perUp=atof(argv[7]);
|
| 94 |
105 |
float perDown=atof(argv[8]);
|
| 95 |
106 |
|
| 96 |
|
float tailleVoxel[3] = {0.195177,0.195177,0.195177};
|
| 97 |
|
|
| 98 |
|
//other paremeters
|
| 99 |
|
int systout;
|
|
107 |
cout<<"Voxel size : ("<<tailleVoxel[0]<<","<<tailleVoxel[1]<<","<<tailleVoxel[2]<<")"<<endl;
|
| 100 |
108 |
|
|
109 |
|
| 101 |
110 |
//-------------------------------------------Names and directories
|
| 102 |
111 |
//new name with arguments
|
| 103 |
112 |
string ar2=argv[2];
|
| ... | ... | |
| 115 |
124 |
string outputdir=filename;
|
| 116 |
125 |
outputdir.erase(filename.size()-4);
|
| 117 |
126 |
string mkdir="mkdir -p "+outputdir;
|
| 118 |
|
systout=system(mkdir.c_str());
|
|
127 |
if(system(mkdir.c_str()));
|
| 119 |
128 |
|
| 120 |
129 |
string filename_txt=outputdir+"/"+filename;
|
| 121 |
130 |
filename_txt.erase(filename_txt.size()-4);
|
| ... | ... | |
| 229 |
238 |
segSave.save_inr(result_name.c_str(),tailleVoxel);
|
| 230 |
239 |
segSave.assign();
|
| 231 |
240 |
string zip="gzip -f "+result_name;
|
| 232 |
|
systout=system(zip.c_str());
|
|
241 |
if(system(zip.c_str()));
|
| 233 |
242 |
}
|
| 234 |
243 |
it+=1;
|
| 235 |
244 |
}
|