root / bin / image2geometry / MGX_EdgeDetect_RNASeq.py @ 7
Historique | Voir | Annoter | Télécharger (1,93 ko)
| 1 |
import os |
|---|---|
| 2 |
gaussianblurvalue=str(0) |
| 3 |
edgedetectvalue=str(8000) |
| 4 |
dilatevalue=str(5) |
| 5 |
path="/home/biophysics/Desktop/Virginie/stade 11/02. normalised_30_scaled/27C/normalised-OtsuT30/27C_PMT3/"
|
| 6 |
os.chdir(path) |
| 7 |
listfiles=os.listdir(path) |
| 8 |
Process.Stack__System__Clear_Work_Stack('0')
|
| 9 |
Process.Stack__System__Clear_Main_Stack('0')
|
| 10 |
Process.Stack__System__Clear_Main_Stack('1')
|
| 11 |
Process.Stack__System__Clear_Work_Stack('1')
|
| 12 |
for i in listfiles: |
| 13 |
Process.Stack__System__Set_Current_Stack('Main', '0') |
| 14 |
Process.Stack__System__Open(path+i, 'Main', '0') |
| 15 |
Process.Stack__System__Open(path+i, 'Main', '1') |
| 16 |
Process.Stack__Filters__Gaussian_Blur_Stack(gaussianblurvalue, gaussianblurvalue, gaussianblurvalue) |
| 17 |
Process.Stack__MultiStack__Copy_Work_to_Main_Stack() |
| 18 |
Process.Stack__MultiStack__Swap_or_Copy_Stack_1_and_2('Main', '1 -> 2') |
| 19 |
Process.Stack__Morphology__Edge_Detect(edgedetectvalue, '2.0', '0.3', '30000') |
| 20 |
Process.Stack__MultiStack__Copy_Work_to_Main_Stack() |
| 21 |
Process.Stack__MultiStack__Swap_or_Copy_Stack_1_and_2('Main', '1 <-> 2') |
| 22 |
Process.Stack__System__Set_Current_Stack('Main', '0') |
| 23 |
Process.Stack__Canvas__Reverse_Axes('No', 'No', 'Yes') |
| 24 |
Process.Stack__Morphology__Edge_Detect(edgedetectvalue, '2.0', '0.3', '30000') |
| 25 |
Process.Stack__Canvas__Reverse_Axes('No', 'No', 'Yes') |
| 26 |
Process.Stack__MultiStack__Swap_or_Copy_Stack_1_and_2('Main', '1 <- 2') |
| 27 |
Process.Stack__System__Set_Current_Stack('Both', '0') |
| 28 |
Process.Stack__MultiStack__Combine_Stacks('Product')
|
| 29 |
Process.Stack__System__Set_Current_Stack('Work', '0') |
| 30 |
Process.Stack__Morphology__Dilate(dilatevalue, dilatevalue, "0", 'No', 'No') |
| 31 |
Process.Stack__System__Save(path+"MGX_"+i[:-4]+'_e'+edgedetectvalue+'_d'+dilatevalue+'.tif', 'Work', '0', '0') |
| 32 |
Process.Stack__System__Clear_Work_Stack('0')
|
| 33 |
Process.Stack__System__Clear_Main_Stack('0')
|
| 34 |
Process.Stack__System__Clear_Main_Stack('1')
|
| 35 |
Process.Stack__System__Clear_Work_Stack('1')
|
| 36 |
Process.Stack__System__Clear_Main_Stack('2')
|
| 37 |
Process.Stack__System__Clear_Work_Stack('2')
|