Improved Input Reference manual with internal references to sections.
Detect collision now uses height above the surface and not the value of the coordinate of the axis perpendicular to the surface.
Added logo to the documentation
Added requirements.txt file for building documentation
Merge branch 'master' of gitlab.com:lch_interfaces/dockonsurf
Updated documentation.
Added sphinx requirement to build documentation
add README
Added options in sample input file dockonsurf.inp
Added documentation files.
Extended README.md
Extended the documentation
Updated README.md and added TODO.
Changed the use of largest value of the moments of inertia principal axis for the trace of the inertia tensor.
Corrected bug. prep_cp2k was taking the original input_file instead of the new one with the updated Project_name.
Corrected bug when printing isolated and refinement most stable structures.
Print the relative energy, of the structures obtained at the refinement step, respect the most stable one.
Added TODO
Make a multidimensional numpy array instead of a list of numpy arrays.
Add conformer info to the slab-molecule structure to allow traceability.
Print a warning message if it's not possible to detect normal vector.
Simplified the reading of coordinates and energies and the selection of conformers.
Moved import statements from module to run_isolated function.
Implemented function to check if a file is binary.
Changed docstring and variable names in check_finished_calcs to improvea readability.
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